PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020778
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HSF
Protein Properties Length: 478aa    MW: 54132.3 Da    PI: 4.8089
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020778genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.21.1e-32481411103
                   HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                   +Fl+k++++++d++++++isw e+g+s+vv+d+ efa+ +Lp++Fkh+nf+SF+RQLn+YgF+k+++++         weF+++ F +gk++ll++i
   DCAR_020778  48 QFLSKTFDLVDDPAVDSIISWGETGQSIVVWDPIEFARLLLPRHFKHNNFSSFIRQLNTYGFRKIDTDK---------WEFANECFLRGKRHLLKNI 135
                   69****************************************************************999.........******************* PP

                   XXXXXX CS
  HSF_DNA-bind  98 krkkse 103
                    r++++
   DCAR_020778 136 LRRRTT 141
                   999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-3643133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5645138IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.08E-3446138IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-2949138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-194972IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-198799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-19100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MNDNEKEFSF PSFNYEDEPV AVSLQFSDNL EEISPQPWRN LHEPPVPQFL SKTFDLVDDP  60
AVDSIISWGE TGQSIVVWDP IEFARLLLPR HFKHNNFSSF IRQLNTYGFR KIDTDKWEFA  120
NECFLRGKRH LLKNILRRRT THSQQTENPS SDLRKAQIED EIERLRKERG MMMQEVIELQ  180
QQHHCTVQHM EAVNEKLQAA EQKQKQMISF LANVFQHPEF LARLQRKDKG SIVSPRTAKK  240
FAKHQETKPP ISALAMEEQI FKFEDNLENS ATAYENPHSN LAEQIVHSLK QETVENPGFS  300
AEVPSCRVQN IVQSHNMAVQ DGLPESLEEV RRGIPDLGPN NSLFVGNKEV SCQQDHFPEY  360
FVCSPYVCGK DNSYPELMSP GFGFEELGGQ FPLNLGSEAG PSISNSNTAV LGNLSNNNVA  420
PEFGASGGMS GIWDVSSLQV AVGSEFDMWH HESSLTELED QVGQPKSDNS ETERVNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-254614317125Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017255766.10.0PREDICTED: heat stress transcription factor A-3-like
TrEMBLA0A161WTG00.0A0A161WTG0_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87272025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.12e-77heat shock transcription factor A3