PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020787
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 243aa    MW: 27833.1 Da    PI: 7.3016
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020787genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-1962115356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+ ++t+eqle Le+ F+++++++ +++ +LA++l L+ rqV vWFqNrRa++k
  DCAR_020787  62 KKKRMTSEQLEYLESRFQEEMKLDPDRKIKLARELALQPRQVAVWFQNRRARWK 115
                  56679************************************************9 PP
2HD-ZIP_I/II112.33.1e-3661152192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekk+r+++eq++ LE+ F+ee kL+p+rK +lareL lqprqvavWFqnrRAR+ktkqlE+ y +Lk+++d ++ e+++L++ev +Lr+ lk
  DCAR_020787  61 EKKKRMTSEQLEYLESRFQEEMKLDPDRKIKLARELALQPRQVAVWFQNRRARWKTKQLEHLYLSLKHQLDLVSMEKHKLQEEVVALRAILK 152
                  69**************************************************************************************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-2047119IPR009057Homeodomain-like
PROSITE profilePS5007117.47557117IPR001356Homeobox domain
SMARTSM003891.6E-1760121IPR001356Homeobox domain
PfamPF000466.6E-1762115IPR001356Homeobox domain
CDDcd000861.70E-1662118No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2063121IPR009057Homeodomain-like
PROSITE patternPS00027092115IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEWNNGNNQI RPSFLSHQST SFNFLYNSHY PETETQAGAH GGMGDVMEDV NRVQQHGASH  60
EKKKRMTSEQ LEYLESRFQE EMKLDPDRKI KLARELALQP RQVAVWFQNR RARWKTKQLE  120
HLYLSLKHQL DLVSMEKHKL QEEVVALRAI LKQEVTRKQV WGGCNNPATT TDMTSAEDTV  180
ESTSVFPSSM HVKTTRVRSC TENNNMNVTA NYQGTYVFEA DEYNNSANWG AAGTAVMPCY  240
NP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109117RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257298.10.0PREDICTED: putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A164WJD20.0A0A164WJD2_DAUCS; Uncharacterized protein
STRINGXP_009758049.18e-56(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.11e-45homeobox 51