PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020809
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 212aa    MW: 24847.7 Da    PI: 5.218
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020809genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.88.2e-16855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd++l   v++lG ++W++ a+  g+gR++k+c++rw +yl
      DCAR_020809  8 KGPWFEEEDQRLTAIVRLLGERRWDALANASGLGRSGKSCRLRWMNYL 55
                     79********************************************97 PP
2Myb_DNA-binding53.55.4e-1762104246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      gr +++E++l++++++q+G++ W++Iar+++ gRt++++k++w++
      DCAR_020809  62 GRISEDEEKLILQLHQQWGNK-WSRIARKLP-GRTDNEIKNYWRS 104
                      7889*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.392355IPR017930Myb domain
SuperFamilySSF466891.43E-275102IPR009057Homeodomain-like
SMARTSM007175.1E-12757IPR001005SANT/Myb domain
PfamPF002498.4E-14855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-20962IPR009057Homeodomain-like
CDDcd001671.05E-71055No hitNo description
PROSITE profilePS5129424.17656110IPR017930Myb domain
SMARTSM007175.6E-1560108IPR001005SANT/Myb domain
PfamPF002498.1E-1562104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2363109IPR009057Homeodomain-like
CDDcd001672.85E-1065106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MQDQKMRKGP WFEEEDQRLT AIVRLLGERR WDALANASGL GRSGKSCRLR WMNYLRPNLK  60
HGRISEDEEK LILQLHQQWG NKWSRIARKL PGRTDNEIKN YWRSRLRREY QVQGQEEAEQ  120
QLTVSNCEGI AQSIGTRDCI LEKDEISESS FESSDTLQLL DYAIMRSPYE NRVSEWFAEW  180
SSDENIDGVK HNLDYCSADS CYCSSLLWNM D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2881094104MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-28810958158MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-28810958158MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-2881094104C-Myb DNA-Binding Domain
1msf_C1e-2881094104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256685.11e-155PREDICTED: myb-related protein MYBAS1
TrEMBLA0A164WIR11e-153A0A164WIR1_DAUCS; Uncharacterized protein
STRINGXP_009625011.16e-66(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.13e-58myb domain protein 27