PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020924
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HSF
Protein Properties Length: 287aa    MW: 32609.5 Da    PI: 7.5541
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020924genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind81.81e-252698274
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT CS
  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks 74
                  Fl+k+y++++d+ +++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+Y  ++ + + ++ ++
   DCAR_020924 26 FLTKTYQLVDDPLTDHIVSWGDDHTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYIHRRKTCQPQQMSH 98
                  9**********************************************************99988877766333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.7E-2918105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.7E-2722234IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.71E-2323101IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.7E-2226105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-152649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-156476IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-157789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAALMLDNCE SIILSLDSHK SVPAPFLTKT YQLVDDPLTD HIVSWGDDHT TFVVWRPPEF  60
ARDLLPNYFK HNNFSSFVRQ LNTYIHRRKT CQPQQMSHTH HSLHRAGFFP YQNPSISPTN  120
SDDQANNWSC DDSPPPLSSP TPHSTTTNLY NTSVTALSED NERLRRSNHM LMSELAHMRK  180
LYNDIIYFVQ NHVKPAVPSH SYPPSLVLAN ANNVHHKGFS NGYDHHQYNN MGKQSSHEGA  240
KIFGVPLQCS KKRSLQHEYM GMSTNKARFV LENDDLGLNL MPPSPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-1522882691Heat shock factor protein 1
5d5v_B5e-1522882691Heat shock factor protein 1
5d5v_D5e-1522882691Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0541481e-45BT054148.1 Zea mays full-length cDNA clone ZM_BFb0133K13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017255918.10.0PREDICTED: heat stress transcription factor B-4-like
SwissprotQ9C6357e-81HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A164WFF20.0A0A164WFF2_DAUCS; Uncharacterized protein
STRINGcassava4.1_010465m1e-109(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.15e-79heat shock transcription factor B4