PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020937
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 211aa    MW: 23094.4 Da    PI: 6.5185
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020937genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-183984147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+W++eEd++l ++v+++G ++W++I++++  gR++k+c++rw + 
      DCAR_020937 39 RGPWSAEEDKILSQLVERFGAKNWSLISKYIK-GRSGKSCRLRWCNQ 84
                     89*****************************9.***********985 PP
2Myb_DNA-binding55.81.1e-1793135347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
      DCAR_020937  93 PFSQAEDEMILAAHEKYGNR-WATIARLLP-GRTDNAVKNHWNST 135
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.3423485IPR017930Myb domain
SuperFamilySSF466896.11E-3237132IPR009057Homeodomain-like
SMARTSM007174.9E-163887IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-244092IPR009057Homeodomain-like
CDDcd001673.02E-154183No hitNo description
PfamPF139212.8E-1842100No hitNo description
PROSITE profilePS5129425.56986140IPR017930Myb domain
SMARTSM007174.3E-1690138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2393139IPR009057Homeodomain-like
CDDcd001673.56E-1393136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEPFNISFSV HTSSDSSSSD SSSSCTKAPG NVDKGEKIRG PWSAEEDKIL SQLVERFGAK  60
NWSLISKYIK GRSGKSCRLR WCNQLSPDVQ HRPFSQAEDE MILAAHEKYG NRWATIARLL  120
PGRTDNAVKN HWNSTLKRRR QGNNENEQNR SSEDEAREVA NAMDVGNVEC GASGSGDMNV  180
DPNEVDPMTV LTLAPPGSSS GGLPEQRGDR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-41381396107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257456.11e-155PREDICTED: transcription factor MYB44-like
SwissprotO231609e-52MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A164WF481e-154A0A164WF48_DAUCS; Uncharacterized protein
STRINGEMJ250267e-71(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79502131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.18e-53myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]