PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_020998

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

HD-ZIP

Protein Properties

Length: 183aa MW: 21447.6 Da PI: 9.9777

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_020998	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.2	5.9e-18	18	74	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r k+ ++t+eq++ Le+ F+ n+ + +++ +LA++l+++ rq+ +W+qN+Ra++k+ DCAR_020998 18 RNKKKRLTQEQVRLLEASFNGNNRLEPDRKLQLAHELDIPPRQIAIWYQNKRARWKN 74 567889*************************************************95 PP
2	HD-ZIP_I/II	104.7	7.3e-34	19	111	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kk+rl++eqv+lLE sF+ +++Lep+rK +la+eL++ prq+a+W+qn+RAR+k++ lE dy+aL+ +++a +++++Leke ++Lr el++ DCAR_020998 19 NKKKRLTQEQVRLLEASFNGNNRLEPDRKLQLAHELDIPPRQIAIWYQNKRARWKNQSLELDYTALHMRLEAELTQKKQLEKEAQRLRIELQR 111 59**************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-18	11	78	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.277	15	75	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.68E-18	17	84	IPR009057	Homeodomain-like
SMART	SM00389	1.8E-16	17	79	IPR001356	Homeobox domain
CDD	cd00086	1.39E-12	18	76	No hit	No description
Pfam	PF00046	2.4E-15	18	74	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	50	73	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MMKNIFKNSE NRKHCTSRNK KKRLTQEQVR LLEASFNGNN RLEPDRKLQL AHELDIPPRQ 60 IAIWYQNKRA RWKNQSLELD YTALHMRLEA ELTQKKQLEK EAQRLRIELQ RLKTEISIKQ 120 QVQMFQPQPP LASVSSISSN CDELRSSSLR EEQVNCSWMH DQALRVEEFY ACLIGGNGSN 180 LI*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017251569.1	1e-84	PREDICTED: homeobox-leucine zipper protein ATHB-52
TrEMBL	A0A164WDK1	1e-131	A0A164WDK1_DAUCS; Uncharacterized protein
STRING	VIT_10s0003g00380.t01	3e-48	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2715	24	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	2e-35	homeobox protein 52

Link Out ? help Back to Top
Phytozome	DCAR_020998