PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021135
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 87aa    MW: 9980.45 Da    PI: 11.52
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021135genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.91.4e-092453134
          AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslg 34
                 ++y+GVr+++ +gr++AeI+d ++    + r++lg
  DCAR_021135 24 PRYRGVRRRP-WGRFAAEIHDpWK----KIRVWLG 53
                 68********.**********883....5999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.3E-52453IPR001471AP2/ERF domain
SMARTSM003800.00272580IPR001471AP2/ERF domain
PROSITE profilePS5103212.9052565IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-122564IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-92568IPR016177DNA-binding domain
PRINTSPR003673.7E-52637IPR001471AP2/ERF domain
PRINTSPR003673.7E-54864IPR001471AP2/ERF domain
PfamPF015784.2E-75275IPR002541Cytochrome c assembly protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0017004Biological Processcytochrome complex assembly
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MRRNNRSKPA TETPIAAAAA GNEPRYRGVR RRPWGRFAAE IHDPWKKIRV WLGILSGAVW  60
ANEAWGSYWN WYPKIITYKL VNSGLQ*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ9159155e-79KJ915915.1 Daucus carota ethylene responsive element binding factor (ERF-B1-2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017254645.19e-32PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_017254646.19e-32PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_017254647.19e-32PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_017254648.19e-32PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9LDE49e-16ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A161ZWR96e-55A0A161ZWR9_DAUCS; Uncharacterized protein
STRINGBra035792.1-P1e-14(Brassica rapa)
STRINGA0A087H1B66e-15(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.14e-07ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]