PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_021251

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 435aa MW: 50362 Da PI: 9.783

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_021251	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.5	4.9e-08	18	66	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + +E++RR ++++ +++L +llP +k++s ++K++ +Av+YI+sLq DCAR_021251 18 RKYIEKNRRCQMKTLYFKLGSLLPRqHCKEGSALPDKID---EAVKYIQSLQ 66 5679*******************77788888888886...9******9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.22E-8	13	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.585	13	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-8	16	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.1E-5	19	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-4	19	71	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00153	21	70	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MESTSLYNPA SSAPKMERKY IEKNRRCQMK TLYFKLGSLL PRQHCKEGSA LPDKIDEAVK 60 YIQSLQLELE KLKDNKDKLM SRKREHSCIT DDTMSPIKKS RSPHLEIQEM GPDMDMVLVN 120 GYDSFINFNE IIHVLHQQGA EVVQASFSST GNSVFHILHP KAVPSFSSST SMECLADMAR 180 AKGTKPISIK ACSEPTNHIR SSENRNIYEK LGQQEREITD KLQTLKLNQA KLHKKRKSIS 240 WYGHGYYPSS TKEDIDRKLW VIRDLKQSLP EPTDSKKPGH RKNTHLCSPE EILLNEQLVK 300 LHKGRLHGSM NLVEERLLLQ KIEKAREEKE KICSDAVPAK QAPYIFMYLH NYKRLMNTSR 360 GYTNQYSEEA IRHCIKVLSN QVEELRMKKM RYEAYRNRLV LEQAATEEEI RIFERKLENI 420 KQKKVELASK SQAI*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MESTSLYNPA SSAPKMERKY IEKNRRCQMK TLYFKLGSLL PRQHCKEGSA LPDKIDEAVK  60
YIQSLQLELE KLKDNKDKLM SRKREHSCIT DDTMSPIKKS RSPHLEIQEM GPDMDMVLVN  120
GYDSFINFNE IIHVLHQQGA EVVQASFSST GNSVFHILHP KAVPSFSSST SMECLADMAR  180
AKGTKPISIK ACSEPTNHIR SSENRNIYEK LGQQEREITD KLQTLKLNQA KLHKKRKSIS  240
WYGHGYYPSS TKEDIDRKLW VIRDLKQSLP EPTDSKKPGH RKNTHLCSPE EILLNEQLVK  300
LHKGRLHGSM NLVEERLLLQ KIEKAREEKE KICSDAVPAK QAPYIFMYLH NYKRLMNTSR  360
GYTNQYSEEA IRHCIKVLSN QVEELRMKKM RYEAYRNRLV LEQAATEEEI RIFERKLENI  420
KQKKVELASK SQAI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017257005.1	0.0	PREDICTED: uncharacterized protein LOC108226549
TrEMBL	A0A164W7D6	0.0	A0A164W7D6_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5105	21	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	3e-21	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_021251