PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021257
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 201aa    MW: 22153.8 Da    PI: 9.2953
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021257genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643e-202272256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr ++ +gr++AeIrdp++   ++r++lg+f+taeeAa+a++ a++ ++g+
  DCAR_021257 22 HYRGVRKRP-WGRYAAEIRDPTK---KTRVWLGTFDTAEEAARAYDTAARDFRGH 72
                 6********.**********864...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.41E-322281No hitNo description
PfamPF008471.1E-132272IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-232280IPR016177DNA-binding domain
SMARTSM003803.7E-382285IPR001471AP2/ERF domain
PROSITE profilePS5103224.1182279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-332281IPR001471AP2/ERF domain
PRINTSPR003678.7E-122334IPR001471AP2/ERF domain
PRINTSPR003678.7E-124561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAMKDKSKLA KRSAASDVKE VHYRGVRKRP WGRYAAEIRD PTKKTRVWLG TFDTAEEAAR  60
AYDTAARDFR GHKAKTNFPS SSAYVNTLHS PCNSSTGDML THAPLGLELT RHHYQPPVGY  120
HQASQVMMYD YEAFLRSGMA YPVRLSPVRI DGGSCSGSDS SSVVQGNDCT QNDATITSKQ  180
TVRKALNLDL NLAPPLEEDQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-211979263ATERF1
3gcc_A1e-211979263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:12654868, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017255520.11e-150PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotQ404771e-44ERF4_TOBAC; Ethylene-responsive transcription factor 4
TrEMBLA0A164W7A31e-149A0A164W7A3_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000689593e-45(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-26erf domain protein 9
Publications ? help Back to Top
  1. Ogata T, et al.
    Involvement of NtERF3 in the cell death signalling pathway mediated by SIPK/WIPK and WRKY1 in tobacco plants.
    Plant Biol (Stuttg), 2015. 17(5): p. 962-72
    [PMID:25996234]