PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_021275

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 336aa MW: 37039.5 Da PI: 7.4608

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_021275	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.3	7.8e-31	11	100	2	91
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 Ca+C+++ +kC+++Cvlapy+ +++ +f++vhk+FG+ nv k++k+l+ e+r +a++slv+eA++r++dPv G++g +++l+++l++ + DCAR_021275 11 CASCRHQHKKCNESCVLAPYLTLDKNLEFQAVHKVFGVGNVAKIVKSLDVEDRGRAVESLVWEANCRQNDPVLGSYGEFMRLSEELNKYR 100 ************************************************************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.618	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.5E-30	11	99	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MQRDNGPPAG CASCRHQHKK CNESCVLAPY LTLDKNLEFQ AVHKVFGVGN VAKIVKSLDV 60 EDRGRAVESL VWEANCRQND PVLGSYGEFM RLSEELNKYR TLYWNNIHAQ GNMSMNMNAN 120 VSVAVLPANS YAGYGYPTMQ SAGALRGEIG YPTMQSAGAL RGEIGYPTMQ SAGALRGEIG 180 YDYPYVQGTD GFKEESNRSA LSLPLQYGVQ INENLKDGSN DGSVIVPQRY STRGAVVASS 240 DITIHELLLS SNEFTGSDHV DNSITASPQL QRIPNKDPAR KGHKWQYFNI YRSKVYFKCL 300 AFGIQMTRLF YTKSALTFDW DNSVGCSSAS NNEFV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-16	9	101	10	109	LOB family transfactor Ramosa2.1
5ly0_B	9e-16	9	101	10	109	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017257543.1	1e-175	PREDICTED: LOB domain-containing protein 2-like
TrEMBL	A0A161ZWG1	0.0	A0A161ZWG1_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10177	18	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	6e-35	LOB domain-containing protein 2

Link Out ? help Back to Top
Phytozome	DCAR_021275