PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_021280

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TCP

Protein Properties

Length: 307aa MW: 33932.5 Da PI: 6.9123

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_021280	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.5	6e-35	21	124	1	91
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaesssssasnsssg. 88 a+g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++ ++ ++ + +++ ++++s++ DCAR_021280 21 ATGRKDRHSKVYTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKNAIDKLEELppwnpmdasTTVPNPNLNPNGLPLEQQQSQAYp 118 589**************************************************************777766554222222222222222222222112 PP TCP 89 ...kaa 91 + + DCAR_021280 119 fhdNPS 124 322222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.5E-31	22	111	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.181	24	82	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MGMKSNGGDI VQVEGGHILR ATGRKDRHSK VYTAKGPRDR RVRLAAHTAI QFYDVQDRLG 60 YDRPSKAVDW LINKAKNAID KLEELPPWNP MDASTTVPNP NLNPNGLPLE QQQSQAYPFH 120 DNPSDDTMKS FFPTSSGMNF HSYTGDVISR CSLQNNSQDL CLSLQSLQED INNSTHPAPG 180 HDHQGLYSGQ AETNFPRMVG WDGEIKPAGY YFNAQTLSQP QMICQSSTAA FSQREPLQSS 240 FSPYVRAWND LPFPVSDQNH TQALIPHLSI SSGSPYASAK FSGFQVPARI QGEEDHPSST 300 PTKSRN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-21	29	82	1	54	Putative transcription factor PCF6
5zkt_B	3e-21	29	82	1	54	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017255161.1	0.0	PREDICTED: transcription factor TCP4-like
Swissprot	Q9MAH8	2e-56	TCP3_ARATH; Transcription factor TCP3
TrEMBL	A0A164W6P7	0.0	A0A164W6P7_DAUCS; Uncharacterized protein
STRING	cassava4.1_031505m	4e-91	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6607	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	3e-52	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3

Link Out ? help Back to Top
Phytozome	DCAR_021280

Publications ? help Back to Top
Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]