PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021299
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 234aa    MW: 26115.4 Da    PI: 4.8041
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021299genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.85.9e-3063120258
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                   D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers +dp++++itY  +Hnh
  DCAR_021299  63 ADSWTWRKYGQKPIKGSPFPRGYYRCSSSkGCPARKQVERSLKDPTFIVITYACDHNH 120
                  69*************************998**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-3056122IPR003657WRKY domain
PROSITE profilePS5081129.99857123IPR003657WRKY domain
SuperFamilySSF1182904.45E-2558121IPR003657WRKY domain
SMARTSM007744.1E-3362122IPR003657WRKY domain
PfamPF031061.3E-2464120IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDYHLSENKS LADDDDVSKI SCEAEIMPLV LDDEAPSPKK SKKVEGKRVV TVPMVEGDVY  60
PPADSWTWRK YGQKPIKGSP FPRGYYRCSS SKGCPARKQV ERSLKDPTFI VITYACDHNH  120
LSPVTAKRSQ TTSSDVKFPP EEEAVFANQP DLEPDNVEFA QFVADFGYLS KITSVILENP  180
VPERSICTEP MFSTRDDEDS LFADLGELPG CSLVFQPKDS RKCNFYTPCH NCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-2147124680Disease resistance protein RRS1
5w3x_D5e-2147124680Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257110.11e-173PREDICTED: probable WRKY transcription factor 65
SwissprotQ9LP562e-47WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A164W6791e-172A0A164W679_DAUCS; Uncharacterized protein
STRINGMigut.M00241.1.p1e-57(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74682232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.17e-50WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]