PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_021438

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 177aa MW: 19994.1 Da PI: 8.2845

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_021438	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.9	4.2e-44	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC++dCv+apyfp +qp+kfanvhk+FGasnv kll++l++ +reda++sl+yeA+ar+rdPvyG+vg+i+ lq ql+q++ +l +k DCAR_021438 7 RCAACKFLRRKCSQDCVFAPYFPPDQPQKFANVHKVFGASNVAKLLNDLRPVQREDAVNSLAYEADARLRDPVYGCVGLISILQDQLKQVQGDLINAK 104 6******************************************************************************************9998887 PP DUF260 99 ee 100 +e DCAR_021438 105 KE 106 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.899	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-43	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MSSSNSRCAA CKFLRRKCSQ DCVFAPYFPP DQPQKFANVH KVFGASNVAK LLNDLRPVQR 60 EDAVNSLAYE ADARLRDPVY GCVGLISILQ DQLKQVQGDL INAKKELANY RTSAVLPYNM 120 LPMLGLCLNQ DHGAMPLVMH DHPQKQHLME AQQLAVAEWE QQEMLRPCKQ EQQRRV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-50	3	110	7	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-50	3	110	7	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017256599.1	1e-129	PREDICTED: LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	2e-61	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A164W2G9	1e-128	A0A164W2G9_DAUCS; Uncharacterized protein
STRING	Gorai.007G210500.1	1e-70	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-63	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Phytozome	DCAR_021438

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]