PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021465
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 182aa    MW: 20382.2 Da    PI: 9.1275
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021465genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.3e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +++++G g W+tI +          R+  ++k++w++
      DCAR_021465  5 KQKWTAEEEAALKAGIAKHGLGKWSTIIKDPEfytalHLRSNVDLKDKWRN 55
                     79***********************************88***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.051161IPR017930Myb domain
SuperFamilySSF466891.22E-15258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-14456IPR009057Homeodomain-like
SMARTSM007175.2E-7459IPR001005SANT/Myb domain
PfamPF002492.0E-7556IPR001005SANT/Myb domain
CDDcd116601.45E-19657No hitNo description
PROSITE profilePS5150412.903119181IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.65E-7120155IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.9E-8123158IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.9E-5124156IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGI AKHGLGKWST IIKDPEFYTA LHLRSNVDLK DKWRNMNAVS  60
SGSSRQKCKP IASNTEVSPM VCDESRILST VVSGDETIRD IKPLATISED VFRSSSKRLI  120
SRLEDHILEA ITNLKEPHGS NRGAIAAYIE DTHKRMKTEL RFEENTYSHL FHVDGFKMAR  180
L*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257444.11e-107PREDICTED: single myb histone 6-like isoform X1
SwissprotC0HIA33e-44SMH6_MAIZE; Single myb histone 6
TrEMBLA0A161ZW241e-132A0A161ZW24_DAUCS; Uncharacterized protein
STRINGXP_010263289.15e-51(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51222235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-41telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]