PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021467
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 201aa    MW: 21938 Da    PI: 8.9436
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021467genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.93.7e-292101195
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++Cvl+ ++     p++q++++ +v+k+FG++ ++++++a+p+ +r+++++sl++eA  r+ +Pv+Gavg++++++++ +q+++e
  DCAR_021467   2 SCNGCRVLRKGCSESCVLRHCLqwiesPEAQAHATSFVAKFFGRAGLMSFISAVPQAQRPAIFQSLLFEAAGRTINPVNGAVGLLWTGKWHECQAAVE 99 
                  6*********************************************************************************************9998 PP

       DUF260  94 la 95 
                  + 
  DCAR_021467 100 TI 101
                  75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.1451107IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-252100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCVLR HCLQWIESPE AQAHATSFVA KFFGRAGLMS FISAVPQAQR  60
PAIFQSLLFE AAGRTINPVN GAVGLLWTGK WHECQAAVET ILRGGTLRPV SEFPSAGLNG  120
VVSDLSNMFK HGNEVSSSRS KRRRLCESSK LSQVVDLDLS LTRGYEVSDK RRLDTVSRNS  180
EESVTTTWFG AGEPKLLNLF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140144KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017255501.11e-146PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SN232e-71LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A164W1S71e-145A0A164W1S7_DAUCS; Uncharacterized protein
STRINGXP_009801229.12e-84(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.19e-74LOB domain-containing protein 38