PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021494
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family DBB
Protein Properties Length: 195aa    MW: 21305.9 Da    PI: 6.0108
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021494genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.16.6e-07433534
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                  C+ +e+  +  fC  ++  lC++C ++ H
  DCAR_021494  4 LCDACESAAALVFCAADEASLCRSCDEKVH 33
                 7*******9******************998 PP
2zf-B_box31.53.8e-105491437
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                 ++C+ +e++++ ++Ce++ + lC +C + +H g    H
  DCAR_021494 54 PRCDICENEPAFFYCETDASSLCLQCDMVIHVGskrnH 91
                 79*****************************5544445 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.139147IPR000315B-box-type zinc finger
SMARTSM003368.3E-8147IPR000315B-box-type zinc finger
PfamPF006432.8E-5342IPR000315B-box-type zinc finger
CDDcd000219.00E-7345No hitNo description
SuperFamilySSF578451.81E-55091No hitNo description
SMARTSM003364.6E-125196IPR000315B-box-type zinc finger
CDDcd000214.01E-85493No hitNo description
PfamPF006436.9E-85491IPR000315B-box-type zinc finger
PROSITE profilePS501199.4425696IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MRTLCDACES AAALVFCAAD EASLCRSCDE KVHMCNKLAS RHVRVGLADP IAVPRCDICE  60
NEPAFFYCET DASSLCLQCD MVIHVGSKRN HARYLFFRQR VEVGVSFTFP GDKASQAEDL  120
TLKLEGESKD KTGQNQSSKP VSAENQDNCS ISKARTMNAS TQGLANRGTM FDLNVKPQKN  180
NGEGSNHQEL FQEA*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). Acts as a negative regulator of blue light-mediated inhibition of hypocotyl elongation through increase of bioactive gibberellin levels (PubMed:20872270). Acts as a repressor of thermotolerance by modulating expression of a set of heat shock-responsive genes (PubMed:23238922). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By blue light (PubMed:20872270) and heat shock (at protein level) (PubMed:23238922). {ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017255416.11e-132PREDICTED: B-box zinc finger protein 18-like
SwissprotQ9SJU57e-63BBX18_ARATH; B-box zinc finger protein 18
TrEMBLA0A164W1901e-142A0A164W190_DAUCS; Uncharacterized protein
STRINGVIT_04s0023g03030.t012e-81(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21320.13e-65DBB family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]