PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_021577

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 185aa MW: 20408.7 Da PI: 7.0008

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_021577	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.9	4.9e-45	13	111	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC++dC++apyfp e+p+kfanvhk+FGasn++kll+++ +++reda++sl+yeAear+rdPvyG+vg i+ lq q+e+l++el++++ DCAR_021577 13 PCAACKFLRRKCVPDCIFAPYFPPEEPHKFANVHKIFGASNITKLLNDILPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQMQVERLQEELDAAN 110 7*********************************************************************************************9987 PP DUF260 99 e 99 + DCAR_021577 111 A 111 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	28.041	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.5E-44	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MASSSNTATY NTPCAACKFL RRKCVPDCIF APYFPPEEPH KFANVHKIFG ASNITKLLND 60 ILPHQREDAV NSLAYEAEAR VRDPVYGCVG AISFLQMQVE RLQEELDAAN ADLIQYASSC 120 NHRYPHQNMS SALPIQSTTT TQYTSQQAPR QIRPNNNAYY PTPSTFSFPW NDNNASGRGG 180 AAGE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-62	3	135	1	128	LOB family transfactor Ramosa2.1
5ly0_B	3e-62	3	135	1	128	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017254795.1	1e-137	PREDICTED: LOB domain-containing protein 25-like
Swissprot	Q9FML4	3e-71	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A164VZ05	1e-136	A0A164VZ05_DAUCS; Uncharacterized protein
STRING	XP_006476856.1	3e-77	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	9e-73	LBD family protein

Link Out ? help Back to Top
Phytozome	DCAR_021577

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]