PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021667
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 370aa    MW: 41724.7 Da    PI: 9.488
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021667genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.5e-15145237598
                  -..-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   5 ltpsdvlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ++ s++      ++++pk+f e++  ++++  +l+l   +grsW v ++++ k +++ +++GW  F+ +n L++gD++vF+l+++s+++++v + r
  DCAR_021667 145 MKESHMVGGgwPNVYIPKSFKEAYTWQSNQ--KLILV-VEGRSWVVFCNMNSKCNQCRISRGWTIFAGDNSLRVGDVCVFELISSSSKKFKVFISR 237
                  555555555333479*********555333..45544.489******************************************9988877777766 PP
2B361.21.8e-19275366198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ff+v+++ ++l  g +++p +f+e++  k   s  ++l+ ++gr+W+vk+ ++kk     +++GWk+F+ +n+L +gDf+vF+l++  e+ l+v +fr
  DCAR_021667 275 FFSVEVHRSYLYGGSMTVPLDFIESNITK--DSCRVVLQLPDGRVWSVKCYINKKCA--KFSAGWKNFATENNLAAGDFCVFELVK--ERLLNVVIFR 366
                  88999999999**************9544..4557***************4455554..4899********************987..4446888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-43362IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-19133239IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-18134238IPR015300DNA-binding pseudobarrel domain
CDDcd100172.27E-17140237No hitNo description
PfamPF023626.0E-14141237IPR003340B3 DNA binding domain
SMARTSM010192.7E-5141239IPR003340B3 DNA binding domain
PROSITE profilePS5086311.998158239IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-24268366IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-25269367IPR015300DNA-binding pseudobarrel domain
CDDcd100171.81E-19274366No hitNo description
PfamPF023624.9E-18275366IPR003340B3 DNA binding domain
PROSITE profilePS5086314.917275368IPR003340B3 DNA binding domain
SMARTSM010192.3E-18275368IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0034613Biological Processcellular protein localization
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MTSSAISQGV FKDFRTEPQG QYNVEYFYSI SFGYLLVFEY KGDSKFQVLI FDPSASEIDY  60
SLARKDKPGS VKSAQVKVRQ IDIDDSSSSD DLIRPCKKTK AEPSSEASPK LGQEKAKEAS  120
KVDKDRALAV ANAFKSKNVS FIHVMKESHM VGGGWPNVYI PKSFKEAYTW QSNQKLILVV  180
EGRSWVVFCN MNSKCNQCRI SRGWTIFAGD NSLRVGDVCV FELISSSSKK FKVFISRASK  240
ETNCEENERL PRVRSEADKA RVLQSLKAYK PNRPFFSVEV HRSYLYGGSM TVPLDFIESN  300
ITKDSCRVVL QLPDGRVWSV KCYINKKCAK FSAGWKNFAT ENNLAAGDFC VFELVKERLL  360
NVVIFRVES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A8e-1925236725142B3 domain-containing transcription factor VRN1
4i1k_B8e-1925236725142B3 domain-containing transcription factor VRN1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00192DAPTransfer from AT1G49480Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256890.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A164VWN70.0A0A164VWN7_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.17e-20related to vernalization1 1