PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021820
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 483aa    MW: 53841 Da    PI: 6.7872
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021820genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.8e-30238297159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  DCAR_021820 238 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGSHNHP 297
                  58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-32223299IPR003657WRKY domain
SuperFamilySSF1182901.44E-27231299IPR003657WRKY domain
PROSITE profilePS5081129.034233299IPR003657WRKY domain
SMARTSM007743.5E-37238298IPR003657WRKY domain
PfamPF031065.5E-27239297IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MGRSKESETK FDLSLKLDTH DEHHSHSDHN QQDGENVSQI MKEPRVDEAQ DHEGSDVVGS  60
PRVSKIQKDF KTQELSALQT EVRRMKEENK LLMKVVEQTL RDYNNLQQKF SIITQDNCDK  120
EPNCFLSLHG NGGDADHIRK RKSSPPEKNV NYDEESELGL SLRIQSQQEQ IREKDDEVVL  180
EAEDVEKDNC EDDIRKKPSP TENKLQRVDL RGLINNAASP ANKKARVSVR ARCDTPTMND  240
GCQWRKYGQK IAKGNPCPRA YYRCTVAPGC PVRKQVQRCL EDMSILITTY EGSHNHPLPV  300
GATALASTAS AAACSYMLVD NNNISNISTF HQQSNFPYHN NISYNSPSPN ALDYANITKF  360
PHQFLMASSS NSSPQLHNPW IPSNLNNIVT STNMLHQFRV PPLQSDDASG KSKGDQGKLM  420
AENMSAITSD PKFKVAVAAA ISSLMNKESQ VNNSLQLRKD GDRNGGNPPV LNSAFVGKEL  480
PE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-22225301176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257412.10.0PREDICTED: probable WRKY transcription factor 9
TrEMBLA0A164VT350.0A0A164VT35_DAUCS; Uncharacterized protein
STRINGEOX974001e-114(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72872129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.18e-66WRKY DNA-binding protein 9