PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021838
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 194aa    MW: 22032.3 Da    PI: 4.5511
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021838genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.81.8e-3581271128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrF Ptdeel+v++L++k++  + +  ++i+++d+y ++PwdL+ k+ +e ++wyf+s+r         +nr+t++gyW+  g d++++s+ ++
  DCAR_021838   8 LPPGFRFCPTDEELLVHFLQRKASLLPYHP-DIIPDLDLYPYDPWDLEGKALGEGSKWYFYSRRT--------QNRITSNGYWNPLGGDESIYSSsTS 96 
                  79*************************998.89**************977778899******984........589*****************99788 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++vg+kk  +fy g +++g+kt+W+m+ey+l
  DCAR_021838  97 KKVGTKKYYAFYIGASSEGVKTNWIMQEYKL 127
                  89***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-455158IPR003441NAC domain
PROSITE profilePS5100544.6238160IPR003441NAC domain
PfamPF023651.6E-219127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGDNNVNLPP GFRFCPTDEE LLVHFLQRKA SLLPYHPDII PDLDLYPYDP WDLEGKALGE  60
GSKWYFYSRR TQNRITSNGY WNPLGGDESI YSSSTSKKVG TKKYYAFYIG ASSEGVKTNW  120
IMQEYKLSDA AASSSRSSSS KRKSSKTDHT KWVVCRVYEH DYDEDEDGGT ELSCLDEVFL  180
SLDDEFDEIS LPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-38415913164NO APICAL MERISTEM PROTEIN
1ut4_B3e-38415913164NO APICAL MERISTEM PROTEIN
1ut7_A3e-38415913164NO APICAL MERISTEM PROTEIN
1ut7_B3e-38415913164NO APICAL MERISTEM PROTEIN
3swm_A3e-38416116169NAC domain-containing protein 19
3swm_B3e-38416116169NAC domain-containing protein 19
3swm_C3e-38416116169NAC domain-containing protein 19
3swm_D3e-38416116169NAC domain-containing protein 19
3swp_A3e-38416116169NAC domain-containing protein 19
3swp_B3e-38416116169NAC domain-containing protein 19
3swp_C3e-38416116169NAC domain-containing protein 19
3swp_D3e-38416116169NAC domain-containing protein 19
4dul_A3e-38415913164NAC domain-containing protein 19
4dul_B3e-38415913164NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256979.11e-142PREDICTED: NAC domain-containing protein 104
SwissprotQ8GWK62e-83NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A164VSQ11e-141A0A164VSQ1_DAUCS; Uncharacterized protein
STRINGGLYMA08G08010.18e-94(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37662447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-52xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]