PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021927
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 231aa    MW: 26497.4 Da    PI: 9.9919
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021927genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.33.7e-10105219298
                  EEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHH.HHHHHHT--TT-E CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltled.esgrsWevkliyrkksgryvltkGWk.eFvkangLkegDf 79 
                  +k+l +sd   ++rl+l k+ ++++                  +g+  e++ +++ d e+g+++e+kl+   +s+ y+l++ W+ +Fvk+ +Lk gD+
  DCAR_021927 105 KKTLEQSDCDHLCRLMLRKDMVQNYiikvwedagrideiakvlDGQ-GEGVVVRVWDyERGKEYELKLKKLVSSQCYILAGAWSnKFVKERRLKKGDT 201
                  588999****************999*****9998888777776433.47889999999999*******99999999*******847************ PP

                  EEEEE-SS.SEE..EEEEE- CS
           B3  80 vvFkldgr.sefelvvkvfr 98 
                  + ++ +   s+f  v++v+ 
  DCAR_021927 202 IGLYWSTAkSRF--VFSVRA 219
                  ****77654555..777664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.06E-1399220IPR015300DNA-binding pseudobarrel domain
CDDcd100174.08E-12102218No hitNo description
Gene3DG3DSA:2.40.330.101.0E-13104222IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.004104221IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MNLKKVTMKN PNENRDKSRK RKQPQVEDLD AGSLSCYTNN NAPVFKKPKK STYECVMNMR  60
IAKNIRGFRF YTREEEEEER FLGVSTKLSL SVDGNESGDD PWKIKKTLEQ SDCDHLCRLM  120
LRKDMVQNYI IKVWEDAGRI DEIAKVLDGQ GEGVVVRVWD YERGKEYELK LKKLVSSQCY  180
ILAGAWSNKF VKERRLKKGD TIGLYWSTAK SRFVFSVRAR APAPGPNAAA *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722SRKRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256525.11e-171PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBLA0A164VQN01e-170A0A164VQN0_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.13e-15B3 family protein