PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_021988

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

MYB

Protein Properties

Length: 226aa MW: 25278.4 Da PI: 8.6151

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_021988	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.6	2.9e-18	5	50	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEdell ++v ++G ++W+ I + ++ gR++k+c++rw + DCAR_021988 5 KGPWSAEEDELLTKLVDEHGARNWTVIGNSIP-GRSGKSCRLRWCNQ 50 79****************************.*********985 PP
2	Myb_DNA-binding	58.2	1.9e-18	59	101	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+++ +a++q+G++ W+tIar ++ gRt++ +k++w++ DCAR_021988 59 AFTAEEDDIIFKAHAQYGNK-WATIARLLN-GRTDNAVKNHWNST 101 79****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	27.785	1	55	IPR017930	Myb domain
SuperFamily	SSF46689	9.73E-31	2	98	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-15	4	53	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-17	5	50	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.9E-25	6	58	IPR009057	Homeodomain-like
CDD	cd00167	1.55E-13	7	49	No hit	No description
SMART	SM00717	3.8E-16	56	104	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	21.708	56	106	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-23	59	106	IPR009057	Homeodomain-like
CDD	cd00167	1.59E-11	59	102	No hit	No description
Pfam	PF00249	3.7E-15	59	101	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MDRTKGPWSA EEDELLTKLV DEHGARNWTV IGNSIPGRSG KSCRLRWCNQ LSPEVKHRAF 60 TAEEDDIIFK AHAQYGNKWA TIARLLNGRT DNAVKNHWNS TLKRKFVSSP GSEERSCRVM 120 KRSESVSDKN GSEISDSCNS EDWNAGKEKA FVMEPPTALT LSLPGTGTDY YDIKEKRGEK 180 NGEGVVRVSE DVVNVMKEMI KVEVRNYFEK EGGVRNAGVK RIGIN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	6e-40	2	106	4	108	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017256234.1	1e-167	PREDICTED: transcription factor MYB44-like
TrEMBL	A0A164VPF6	1e-165	A0A164VPF6_DAUCS; Uncharacterized protein
STRING	XP_008373085.1	1e-71	(Malus domestica)
STRING	Lus10014103	5e-72	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1586	24	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	7e-63	myb domain protein 70

Link Out ? help Back to Top
Phytozome	DCAR_021988