PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_022032

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Protein Properties

Length: 79aa MW: 8809.27 Da PI: 10.177

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_022032	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.5	7.6e-11	4	54	32	86
--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 e+ +++l de g++ + ++ k + l++GWk+F+ +++L gD++vF+++ DCAR_022032 4 EDAKVVLVDEAGQERDTTY--LAKH--HGLSAGWKRFAMEHELVKGDVLVFHMIT 54 5679*************..4444..55*********************654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	9.643	1	64	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.0E-9	2	58	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.59E-10	2	62	No hit	No description
SuperFamily	SSF101936	3.34E-10	2	59	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	8.7E-8	4	54	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 79 aa Download sequence Send to blast
MPSEDAKVVL VDEAGQERDT TYLAKHHGLS AGWKRFAMEH ELVKGDVLVF HMITHYIFKA 60 IKKSSPPARA KVVKFKTS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017256209.1	3e-23	PREDICTED: putative B3 domain-containing protein At5g58280 isoform X1
Refseq	XP_017256210.1	2e-23	PREDICTED: B3 domain-containing protein Os01g0234100 isoform X2
Refseq	XP_017256211.1	2e-23	PREDICTED: B3 domain-containing protein Os01g0234100 isoform X3
Refseq	XP_017256212.1	2e-23	PREDICTED: B3 domain-containing protein Os01g0234100 isoform X3
TrEMBL	A0A161XD41	3e-50	A0A161XD41_DAUCS; Uncharacterized protein
STRING	EOX98224	6e-15	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	4e-16	B3 family protein

Link Out ? help Back to Top
Phytozome	DCAR_022032