PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022075
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 485aa    MW: 55537.3 Da    PI: 4.7698
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022075genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.8e-17174257190
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  ffk++      +++rl +p  f+e  +gk     t  l+++++ +W+v+   +k++++y + +GW eFv++n++  gDf+vF++dg+ +f
  DCAR_022075 174 FFKAF--ITEEAHRRLNIPLAFTEYLEGK--IAHTAFLRNRKSYVWTVTT--TKSRNQYSFDNGWPEFVEQNDVHLGDFLVFQYDGKCTF 257
                  78888..44566778********555777..5569***************..********************************997776 PP
2B3322.1e-103954681388
                  TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSS CS
           B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grs 88 
                  ++ l +p + ++++++k   +k+l +  ++gr+W+ +++++k + r+vl+kGW+  +k n+L+  D ++ +++ g+ 
  DCAR_022075 395 RSDLFVPSDVIKDFNLK--LPKDLCIFVKHGRRWKTEVKVWKDG-RTVLSKGWRPICKWNNLQLDDRCICEFVpGDG 468
                  34478899999999888..778999999**********999997.779********************999775553 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.04E-1024116IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-625115IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.329115IPR003340B3 DNA binding domain
PROSITE profilePS508636.14663115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-19167267IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-19168267IPR015300DNA-binding pseudobarrel domain
CDDcd100173.83E-12172262No hitNo description
PROSITE profilePS5086312.351172265IPR003340B3 DNA binding domain
SMARTSM010194.7E-13174265IPR003340B3 DNA binding domain
PfamPF023621.1E-14174257IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-15380464IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-18381466IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.63383482IPR003340B3 DNA binding domain
CDDcd100179.86E-9384469No hitNo description
SMARTSM010193.3E-7386482IPR003340B3 DNA binding domain
PfamPF023624.8E-8395472IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MPAAQISVSL KYLKPAKMAS AFSDNGPSFF TLLHHRRIPA VFKGMIGERY PCVIYLKVSS  60
GPWFKIVVCD DDNEKMAMKE GLKGFLLSNN ITMSNFLVFC FDGVSSFHVQ VFEPSGLERV  120
PENKEQLETI GTPNGKRKPG RPRKYGKDNH VLRGKKEQQY QDYGKEPSKK IPAFFKAFIT  180
EEAHRRLNIP LAFTEYLEGK IAHTAFLRNR KSYVWTVTTT KSRNQYSFDN GWPEFVEQND  240
VHLGDFLVFQ YDGKCTFDFK HFGTSMCEKE AKILSFKIEE EYGEGFDREA ETSEKKYADS  300
DNSFSDVNDE NDGDEDDEGD NDVVLEDEKD VGEDAGYDYD DDNFDGDEDV EGEDVDEEVS  360
VKDVETNEED AIFKSGIVER PKNPYFVAKI LPSRRSDLFV PSDVIKDFNL KLPKDLCIFV  420
KHGRRWKTEV KVWKDGRTVL SKGWRPICKW NNLQLDDRCI CEFVPGDGEE GLFLQMTIVR  480
AGSW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256169.10.0PREDICTED: B3 domain-containing protein REM20-like isoform X1
TrEMBLA0A161ZUS40.0A0A161ZUS4_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.15e-14B3 family protein