PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022379
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 1115aa    MW: 129047 Da    PI: 10.2589
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022379genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.55e-13201021199
                  HHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  11 lksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +++  l++p kf++ h g     ++ +l+   +   W+vk   ++  ++ +++kGWk+F++   L  gD +vF++ ++ ef  +v +f++
  DCAR_022379  20 FSK-KLMIPSKFVSLHRGT--LARKCVLRPtGTQDAWRVKT--KQINDSLYFKKGWKKFARHYSLGFGDLLVFRYAQDCEF--YVDMFDQ 102
                  444.49*******999777..444677666345599*****..999999**************************999999..9999987 PP
2B345.11.8e-14150243199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f+k++  ++v   g l l  +fa+++ +++++  ++++e  sg++W+  +  rk   +y lt++W+  v ++ Lk+gD++ F+l+++++ +l++++f+
  DCAR_022379 150 FLKIMQWAYVRPGGYLPLTTDFARKYFKDSTR--EVKIE-VSGKTWTAGV--RKDCATYRLTRCWSYLVTEQALKVGDVCAFELINTEDYTLKLTIFS 242
                  778888888999999999********877555..67755.59********..*********************************99********998 PP

                  S CS
           B3  99 k 99 
                  +
  DCAR_022379 243 S 243
                  6 PP
3B341.32.8e-133063929100
                  HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
           B3   9 dvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                   +l+ + l++p kfa+ h g     ++ +l+   +   W v+   ++  ++ ++++GWk+F++   L  gD +vF+++++ ef  +v vf+ks
  DCAR_022379 306 TYLRARYLIIPPKFARLHLGT--LARKCILRPtGTQDAWLVRT--KQINDSLYFKRGWKKFAQHYSLGFGDLLVFRYKKDCEF--HVDVFDKS 392
                  55566789********99555..33456666535559******..999999**************************999999..*****985 PP
4B3421.6e-1347656010100
                  HHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
           B3  10 vlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                   +++  l++p +f++ + +     ++ +l+   +  sW v+ ++ k s   +++kGWk+F++ + L  gD ++F++ ++ +f  +v +f+ks
  DCAR_022379 476 DFSK-KLMIPPQFVRLYRET--LARKCILRPtGTRDSWCVRTKWIKDS--LYFKKGWKKFARHHSLGYGDLLIFRYAKDCKF--YVDMFDKS 560
                  4444.49*******999744..66677777634559******766665..99************************999999..99999985 PP
5B339.69.2e-1376384711100
                  HHTT-EE--HHH.HTT.---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
           B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                   ++g+l +p kf++ h g     +++ +++ ++g   sW v+   ++  +  +++kGWk+F++ + L  gD +vF++ ++ ef  +v +f+ks
  DCAR_022379 763 IRRGNLLIPSKFVRLHcG-T--LPRKYMIR-PTGtrDSWGVRT--KQINNLLYFKKGWKKFARHHLLGFGDLLVFRYAQDCEF--HVDIFDKS 847
                  57889***********64.4..33344444.444359******..888888**************************999999..*****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-197105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-188105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.8159103IPR003340B3 DNA binding domain
CDDcd100173.49E-1210101No hitNo description
SMARTSM010191.8E-1112103IPR003340B3 DNA binding domain
PfamPF023625.6E-1019102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-17142243IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-14145241IPR015300DNA-binding pseudobarrel domain
CDDcd100178.24E-10148242No hitNo description
PROSITE profilePS5086311.462150244IPR003340B3 DNA binding domain
SMARTSM010193.0E-5150244IPR003340B3 DNA binding domain
PfamPF023627.6E-13150243IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-19294394IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.647298392IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.6E-19301394IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-11302390No hitNo description
SMARTSM010192.8E-8303392IPR003340B3 DNA binding domain
PfamPF023623.4E-10306391IPR003340B3 DNA binding domain
SuperFamilySSF1019361.61E-20463562IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-19463562IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.464466560IPR003340B3 DNA binding domain
CDDcd100176.83E-13467558No hitNo description
SMARTSM010195.7E-13469560IPR003340B3 DNA binding domain
PfamPF023621.1E-10470559IPR003340B3 DNA binding domain
SuperFamilySSF1019361.0E-5609700IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-5609684IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.118614708IPR003340B3 DNA binding domain
SMARTSM010191614703IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-19747849IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-17747849IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.182753847IPR003340B3 DNA binding domain
SMARTSM010192.4E-9756847IPR003340B3 DNA binding domain
CDDcd100173.88E-10757845No hitNo description
PfamPF023621.7E-10761846IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1115 aa     Download sequence    Send to blast
MGRRPPERKP AFSKILVKDF SKKLMIPSKF VSLHRGTLAR KCVLRPTGTQ DAWRVKTKQI  60
NDSLYFKKGW KKFARHYSLG FGDLLVFRYA QDCEFYVDMF DQSCCLKELA VTSHNVKSRK  120
HSHLEEANPG EKEALDKAEK LMSSSKFPAF LKIMQWAYVR PGGYLPLTTD FARKYFKDST  180
REVKIEVSGK TWTAGVRKDC ATYRLTRCWS YLVTEQALKV GDVCAFELIN TEDYTLKLTI  240
FSSTRKNKIC KTKARPFSSF EARSCQAPKK RSSHALEAQS RKAIKAANRF SSLSKYPSSP  300
YVMRHTYLRA RYLIIPPKFA RLHLGTLARK CILRPTGTQD AWLVRTKQIN DSLYFKRGWK  360
KFAQHYSLGF GDLLVFRYKK DCEFHVDVFD KSCCLKELAV KSPHVGSQMD TTSKFPRKKK  420
KLQTKARPGK ALEAKYPSCP CVMNTSYLHG RYLEYKRMGR SPPPRKPSFM KILVTDFSKK  480
LMIPPQFVRL YRETLARKCI LRPTGTRDSW CVRTKWIKDS LYFKKGWKKF ARHHSLGYGD  540
LLIFRYAKDC KFYVDMFDKS CCFKEPVNSQ NVGSQRDTTP ILPGQEAKVD LETSALDAAL  600
DAEEFMAGSE FPAFNRIVRP AYLKANGYMP IDPNFGRWYL EDSIRDVKID VSGKIWTVGV  660
IEHGSSGRLS RCWSSLAKEH ALKAVHGSSI LLHSDNSPSF TGSVECVEDR ENCQTKARSG  720
KALEARSSQA LEEDSSQVIE AAYEFASQSK HPSYPCVMSF NYIRRGNLLI PSKFVRLHCG  780
TLPRKYMIRP TGTRDSWGVR TKQINNLLYF KKGWKKFARH HLLGFGDLLV FRYAQDCEFH  840
VDIFDKSCCH KDPVTSQDIE SRRDTTLILP RENKNIQSKT RSGQALETHS SQALEAKSNE  900
EFEARVNQAR ETAYKFSSLS KYPSYSCVMQ YSYVRQKFLF ERWDANQKSR MKAQSDLQKM  960
QRKNIRGLCE KFAVTKLEFK FVIEAWQQIV KCRRTLKWSY VYGYFIPEDE PAKTALFEYL  1020
QGEAEAGLER HHHCAEKELF MVLNDVNATA DQFHSFRVKL EELTRVTRTY FANLVTALEN  1080
NLYESEIRGP PKEKTRKIVK KFTKQRGERR KVQK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1415421PRKKKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256419.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A164VF790.0A0A164VF79_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.19e-16B3 family protein