PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022391
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NF-YA
Protein Properties Length: 184aa    MW: 20896.5 Da    PI: 10.1652
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022391genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA89.93.4e-283187158
    CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                 +ep+YV +KQy++I++RRq+Rak+e +kk+ +ksrkpylheS  +hA+rR+ g+gGrF
  DCAR_022391 31 EEPVYVDPKQYHGIIRRRQSRAKAELQKKV-TKSRKPYLHESCYQHAMRRATGCGGRF 87
                 69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.2E-322990IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.483090IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.9E-233287IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-193355IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-196487IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MGEHLATSTQ TELVHHTINI LKSTNTFVLE EEPVYVDPKQ YHGIIRRRQS RAKAELQKKV  60
TKSRKPYLHE SCYQHAMRRA TGCGGRFLNT KKLDASVADS RSKELSFGRS VNSSVPKWFT  120
TTCDENSNPK EKRSTFKEAF PSDDTNGCDL FSMYNFRSAN SKRQVSFQQQ RGHTVVNQVL  180
YGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-183195266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257507.11e-137PREDICTED: nuclear transcription factor Y subunit A-5-like
TrEMBLA0A164VEX61e-136A0A164VEX6_DAUCS; Uncharacterized protein
STRINGXP_004306538.12e-35(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112322025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.11e-30nuclear factor Y, subunit A7