PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022508
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 232aa    MW: 26648.3 Da    PI: 9.0813
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022508genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3352.5e-11106217297
                  EEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHH.HHHHHHT--TT-EEEE CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltled.esgrsWevkliyrkksgryvltkGWk.eFvkangLkegDfvvF 82 
                  +k+l++sd  ++ rl+l k+ +++h               + ++ e++ +++ d e+ r++e+kl+ + +s++yv ++ W+ eFvk+ +Lk gD++ +
  DCAR_022508 106 KKTLKHSDCDRLYRLTLCKDMVQNHiikvweeagkvdeieKVVSDEGVAVKVWDyEREREYELKLKKQSSSKSYVVSGAWRkEFVKERRLKKGDIIGL 203
                  6999******************999****99987776655444448889999998888*******88999999*******637*************** PP

                  EE-SSSEE..EEEEE CS
           B3  83 kldgrsefelvvkvf 97 
                  + +  s+ ++v++v+
  DCAR_022508 204 YWST-SKSRFVFSVL 217
                  *665.4444577766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.29E-12101218IPR015300DNA-binding pseudobarrel domain
CDDcd100173.53E-11103217No hitNo description
SMARTSM010190.002105220IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.9E-13105217IPR015300DNA-binding pseudobarrel domain
PfamPF023627.1E-8107217IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MNMKIDTMKS PNEIPEESRK RRLEDLDAGS LRLSTPSCYT NCDAAVFEKP ENSTFDSALN  60
IRIAKNISGF RSYTHEEEAR ERFLGVSTKL KLWIDGSEGN DPWKIKKTLK HSDCDRLYRL  120
TLCKDMVQNH IIKVWEEAGK VDEIEKVVSD EGVAVKVWDY EREREYELKL KKQSSSKSYV  180
VSGAWRKEFV KERRLKKGDI IGLYWSTSKS RFVFSVLARA PPVAVSERGG E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256383.11e-170PREDICTED: B3 domain-containing protein At2g33720-like
TrEMBLA0A164VCF11e-168A0A164VCF1_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.18e-17B3 family protein