PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022876
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 284aa    MW: 32610.4 Da    PI: 10.3087
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022876genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.8e-158841798
                 E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
           B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98
                  +p  f+ + +gk      +tl+d+sgr W+  +  ++++++++l +GW++Fv+++ ++ g f+v++++++ s+f  vvk+f 
  DCAR_022876  8 LIPSVFMMNLKGK--IANAVTLKDLSGRCWQADI--KQTKEGFFLYNGWERFVSDKSVELGSFFVLRYVESsSSF--VVKIFG 84
                 5899999666777..4457***************..*********************************876777..***996 PP
2B332.31.8e-101712371583
                  -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEE CS
           B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFk 83 
                   l++pk+ +++hg+    +k + ++d +g++W++ +++ +  gr+v+t+GW++F ++ +L+ ++D + ++
  DCAR_022876 171 TLYVPKPLLDQHGIT--LNKSVEMQDHNGKVWQLSITHLRD-GRTVITQGWRDFLEQYNLNtQKDELELE 237
                  5899********977..7778***************76555.5789**************9566666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.929186IPR003340B3 DNA binding domain
SMARTSM010192.8E-5586IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-16586IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-16587IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-13883IPR003340B3 DNA binding domain
CDDcd100172.88E-14983No hitNo description
Gene3DG3DSA:2.40.330.103.4E-12155240IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.82E-12155229IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.075160257IPR003340B3 DNA binding domain
PROSITE profilePS508639.291172257IPR003340B3 DNA binding domain
CDDcd100173.99E-8172255No hitNo description
PfamPF023629.4E-8172255IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MQLWCYQLIP SVFMMNLKGK IANAVTLKDL SGRCWQADIK QTKEGFFLYN GWERFVSDKS  60
VELGSFFVLR YVESSSSFVV KIFGPNGIKT EDLARVKIED EGAEMQTDSM QNHRETIPAR  120
HEQSPEGIRQ SMSPSRGSRI GKKQKFVQSA EHACTKNPCF PANYRPSTPY TLYVPKPLLD  180
QHGITLNKSV EMQDHNGKVW QLSITHLRDG RTVITQGWRD FLEQYNLNTQ KDELELEIIR  240
GRGSDCKDLK VRIIKRVTPR GRGRPREPKD IRPRGPGRPR KMK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A164V3H60.0A0A164V3H6_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-15B3 family protein