PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_022957

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 333aa MW: 36967.2 Da PI: 6.5209

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_022957	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.8	2.3e-09	46	95	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL l ++ +K++Ka+iL +++ +++L DCAR_022957 46 RKVQKADREKLRRDRLNEQFTELGNTLDPD----RPKNDKASILGDTIQVLRDL 95 5677889******************997....79***********99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.173	45	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-13	45	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-12	46	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.78E-7	46	99	No hit	No description
Pfam	PF00010	3.0E-7	46	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-7	51	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MTVSINLSYV DKHLLQSKIC NLILLTDPKS TCMRAEADPG ECNVARKVQK ADREKLRRDR 60 LNEQFTELGN TLDPDRPKND KASILGDTIQ VLRDLTTQVD KLKAEYATLT EESRELTQEK 120 NDLKEEKASL KSDIDNLNLQ YQQRIRAMYP WGGMDPSVVM HPPSYPYPVP MPMAPGPIPM 180 HPSIQPYHYF GNQNPALVPN PCSTFIPYLT PNTIIEQQSR TVNPVVQASS RSRISSKQDS 240 RQRSSDHGES KAVEDSDDVA TDLELKTPGS TADQDSSSRQ QKPKKSSRKD RTLSDGNSSS 300 RCSSSHSVLV SSSDSVFGAG IGSDDTEKEQ QK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017254755.1	0.0	PREDICTED: transcription factor bHLH121
Swissprot	Q9LT23	2e-92	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A161ZSU6	0.0	A0A161ZSU6_DAUCS; Uncharacterized protein
STRING	EOX97758	1e-130	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5456	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	4e-78	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_022957

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]