PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_023034

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

SRS

Protein Properties

Length: 182aa MW: 20395 Da PI: 8.7347

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_023034	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	168.6	3.3e-52	2	140	6	153
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaeskkelet 102 ++CqdCGnqakk+C+++RCR CC++rgf+C+thvkstW+p++ rr q +++ ++++ a kr r++ ssa+++ DCAR_023034 2 MRCQDCGNQAKKECVYMRCRSCCRNRGFQCQTHVKSTWIPVSTRRPALPQPSSSPPPPTHHHhVYPAIKRYRDH----------HASSSAHHPLGYGR 89 68******************************************9888887776666655233444555543..........22234455677888 PP DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++P+e +a rcvrvss d++ +e+aYqt+v+i Gh+fkGiLydqG+ DCAR_023034 90 GEFPAETTFPATLRCVRVSSDDNAVDEYAYQTSVNIEGHIFKGILYDQGPV 140 99*********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	9.8E-51	2	139	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.5E-25	4	45	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.8E-21	92	139	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MMRCQDCGNQ AKKECVYMRC RSCCRNRGFQ CQTHVKSTWI PVSTRRPALP QPSSSPPPPT 60 HHHHVYPAIK RYRDHHASSS AHHPLGYGRG EFPAETTFPA TLRCVRVSSD DNAVDEYAYQ 120 TSVNIEGHIF KGILYDQGPV RQEASSSAAA IFQQPYLFTT ASTQPFELVN PSTQFLPYPK 180 P*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017257371.1	1e-134	PREDICTED: protein SHI RELATED SEQUENCE 3-like
TrEMBL	A0A161XAH1	1e-133	A0A161XAH1_DAUCS; Uncharacterized protein
STRING	XP_009602229.1	5e-54	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	1e-40	SHI-related sequence3

Link Out ? help Back to Top
Phytozome	DCAR_023034