PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023063
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family CPP
Protein Properties Length: 393aa    MW: 43990.4 Da    PI: 5.3064
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023063genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR24.26.7e-0826511642
          TCR 16 kYCeCfaagkkCseeCkCedCkNkeek 42
                  YCeCfa+g++C++ C C++C+N+ e+
  DCAR_023063 26 VYCECFASGTYCDD-CGCNNCRNNFEN 51
                 6************9.********9875 PP
2TCR45.41.6e-1492127439
          TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                  +gCnCk+s+Clk+YC+Cf  ++ Cse+C+C dC+N 
  DCAR_023063  92 EGCNCKRSRCLKRYCNCFRTNSLCSEKCRCMDCNNF 127
                  79********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163423.84514129IPR005172CRC domain
SMARTSM011140.012451IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.1E-52648IPR005172CRC domain
SMARTSM011145.1E-889130IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.0E-1192127IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MRKRSESVAD ESEFPFSISV PPSLAVYCEC FASGTYCDDC GCNNCRNNFE NESARQDAIS  60
LTLERKPNAF RRMAGQHLIL NAEDPAKTVL VEGCNCKRSR CLKRYCNCFR TNSLCSEKCR  120
CMDCNNFEGC EERLASNNGK DASIFTKVVQ ANIVIHGEVE HSSYSSFQNC INRNDQNLQS  180
LNKEDPSTFE AVQIQQPPAP ATMDSSKVAY RSLLAGLIQP GDIRELSAHL VVVSDATKFF  240
KAKYYSTNMR TVGESQMGIV DSLANQDVEI SYGLLDLNPK TKYNFHGKLV DSGSTDTDQQ  300
NGKPVSHGTV ELMCDEQASL FNHNTTPDMI LDYGCNADVH AQQERLVLRH FCDCLMKLIC  360
RGKAKERQVM MSLRFDTDDQ HEPVVLDHEE EL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-151513313127Protein lin-54 homolog
5fd3_B2e-151513313127Protein lin-54 homolog
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017255332.10.0PREDICTED: protein tesmin/TSO1-like CXC 6 isoform X2
TrEMBLA0A164UZ330.0A0A164UZ33_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.15e-48Tesmin/TSO1-like CXC domain-containing protein