PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023072
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 146aa    MW: 16059.9 Da    PI: 7.6765
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023072genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.1e-162978255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  y+GVr +++  +Wv+eIr+p++   + r++lg++ t+e+Aa+a++ a+++++g
  DCAR_023072 29 NYRGVR-KRYGSKWVSEIRVPRT---KSRIWLGTYSTPEMAARAHDVAALCIKG 78
                 69***8.445778*******954...4***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.77E-272888No hitNo description
PROSITE profilePS5103221.2062986IPR001471AP2/ERF domain
PfamPF008476.5E-102978IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-272987IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-192987IPR016177DNA-binding domain
SMARTSM003803.1E-302992IPR001471AP2/ERF domain
PRINTSPR003671.3E-73041IPR001471AP2/ERF domain
PRINTSPR003671.3E-75268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
METRSTSSNS VEKEARPVRA EGSANKHTNY RGVRKRYGSK WVSEIRVPRT KSRIWLGTYS  60
TPEMAARAHD VAALCIKGDK NILNFPHLVD SLPRPGSTSP ADIRAAAAEA AAMDWPEPSA  120
SSSVDHDDFF NDLEDINIIM TWSTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-142087573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256078.11e-104PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ391277e-37TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A164UYV91e-102A0A164UYV9_DAUCS; Uncharacterized protein
STRINGXP_008242523.15e-38(Prunus mume)
STRINGEMJ036635e-38(Prunus persica)
STRINGXP_004501158.12e-38(Cicer arietinum)
STRINGXP_004517241.12e-38(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.11e-37ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]