PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023118
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TCP
Protein Properties Length: 375aa    MW: 41768.4 Da    PI: 8.4335
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023118genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.91.6e-29522033122
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssaseceaesss 79 
                  g+kdrhsk++T +g+RdRR+Rls++ a++++dLqd+LG+ ++sk ++WLl   k  i++l+ +                                   
  DCAR_023118  52 GGKDRHSKVCTIRGLRDRRIRLSVPSAIQLYDLQDRLGLNQPSKVVDWLLDVTKDDIDKLPPLqmppgdftqfyqqtlaphhelI------------- 136
                  79*************************************************************5555555444444444444440............. PP

          TCP  80 ssasnsssg................................kaaksaakskksqksaasalnlakesrakarara 122
                          +                                 + +++  +++++++++   nl+ +srak ++ +
  DCAR_023118 137 --------NsippsslspffstnsefvkdggnqvfgkeelrINDSNEDGQSNTTRKSKYWPNLDTDSRAKNKEIE 203
                  ........233333334555555555555666666788886333333366666666677999999***9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.6E-2753205IPR005333Transcription factor, TCP
PROSITE profilePS5136928.12453111IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MINSSRGKNV RAKQEEAETN DIKSSSTTIT SSSRQWAGFK NPRIVRVSRS FGGKDRHSKV  60
CTIRGLRDRR IRLSVPSAIQ LYDLQDRLGL NQPSKVVDWL LDVTKDDIDK LPPLQMPPGD  120
FTQFYQQTLA PHHELINSIP PSSLSPFFST NSEFVKDGGN QVFGKEELRI NDSNEDGQSN  180
TTRKSKYWPN LDTDSRAKNK EIEGENINKW NVPANMQETE GGHNSVSYNP QLSAQNFLPL  240
VNQFPFPSLI SNTMAAYNWE PPSLSLSQFG TQVFPSQVHS QGSTPSGSLP PVAHPTPSQL  300
IFYPPPTPLF SPQYPSFTST SSMENDPRHA NHFPFLSSGT QNIAPSSVVS PFRFINPFNI  360
NTKENSQNND DTAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1758112155Putative transcription factor PCF6
5zkt_B1e-1758112155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256965.10.0PREDICTED: transcription factor TCP5
RefseqXP_017256966.10.0PREDICTED: transcription factor TCP5
RefseqXP_017256967.10.0PREDICTED: transcription factor TCP5
TrEMBLA0A161YAL50.0A0A161YAL5_DAUCS; Uncharacterized protein
STRINGEOY220942e-95(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.18e-52TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5