PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023169
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 144aa    MW: 16182.7 Da    PI: 7.0936
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023169genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.6e-074167127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 +++++C +++rtG  k+G  C F+H++
  DCAR_023169 41 WDEKPCAYYMRTGAYKFGIACIFHHPQ 67
                 6789*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF509938.11E-9241No hitNo description
PfamPF028971.6E-12243IPR023302Peptidase S9A, N-terminal domain
Gene3DG3DSA:2.130.10.1202.9E-12242IPR023302Peptidase S9A, N-terminal domain
PROSITE profilePS501039.7794068IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-44167IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0004252Molecular Functionserine-type endopeptidase activity
GO:0046872Molecular Functionmetal ion binding
GO:0070008Molecular Functionserine-type exopeptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MQVLLDPNEL SEDGTLALSV YAVSKDAKYL AYALNSSGSD WDEKPCAYYM RTGAYKFGIA  60
CIFHHPQPDP AVSVTGPFHY RSTDSSGYLM EVDFLHGRFP KQHTCMLLIQ EVRRPTCQLF  120
ILPLKGCYLH QNGTLTWIMS LLK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A164UWI71e-104A0A164UWI7_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.23e-10C3H family protein