PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023232
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family M-type_MADS
Protein Properties Length: 225aa    MW: 25560.8 Da    PI: 6.939
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023232genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.73.1e-181965349
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 i ++  rqvtfskRr+g++ KA+EL+vL++ae a+i+ s+ ++++ +
  DCAR_023232 19 IIDEYSRQVTFSKRRTGLFNKASELCVLTGAETAIIVESPGNRVFAF 65
                 5567789**********************************999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.876969IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-25968IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-241082IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-151131IPR002100Transcription factor, MADS-box
PfamPF003193.2E-201865IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-153146IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-154667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSMPQKKTQG RKKIEIRKII DEYSRQVTFS KRRTGLFNKA SELCVLTGAE TAIIVESPGN  60
RVFAFGHPSV DAVVDKYLAG SSSVSSQDNL SVKQVNVNYL IAHNNFNLKY REIAKEIEEE  120
KNKDTNFRWQ ESFEDLGVEE LEKYIDSMEE LKDKLATRAN EVEMIRNSSS FDVNQSLKNE  180
GVDAFLVINQ NADCGGTQHY MGEKGMEKKV WNHKMSLYGN RCLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1c7u_A9e-161077168MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
1c7u_B9e-161077168MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256044.11e-166PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A164UV751e-166A0A164UV75_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-27AGAMOUS-like 62