PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023259
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 639aa    MW: 71225.8 Da    PI: 8.6314
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023259genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-15261305147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a k++G   W+ I +++g ++t+ q++s+ qk+
      DCAR_023259 261 REKWTEDEHQRFLEALKLYGRA-WRHIEEHIG-TKTAVQIRSHAQKF 305
                      789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF506306.88E-214192IPR021109Aspartic peptidase domain
Gene3DG3DSA:2.40.70.101.1E-2341192IPR021109Aspartic peptidase domain
PfamPF145418.1E-3070193IPR032799Xylanase inhibitor, C-terminal
SuperFamilySSF466895.01E-15255309IPR009057Homeodomain-like
PROSITE profilePS5129421.249256310IPR017930Myb domain
TIGRFAMsTIGR015572.3E-16259308IPR006447Myb domain, plants
SMARTSM007171.9E-12260308IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-8261301IPR009057Homeodomain-like
PfamPF002492.9E-13261304IPR001005SANT/Myb domain
CDDcd001672.43E-9263306No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MSTQFKLPYK FALCIPSTSE YALGHMFICG WPYILLPYSK DIAKELITTQ LSINPISTTL  60
VYTTGDPSDE YSIDVKSISV HNKPVTINAS LLSINKEGYG GTKFSTITPY TKLETSIYSS  120
LVSAFSKTAA LRKMKNVALV VPFGACFNAK NIDKSQTGPV VPFTDIGLAG NKFWRFYGAN  180
SMVSYYCLKF ARTLHRGVAM MVQEMKGETE NTGQNISDMC RHEFPTGGNL QSETLDPKPL  240
SSFENEYMPK VRKPYTITKQ REKWTEDEHQ RFLEALKLYG RAWRHIEEHI GTKTAVQIRS  300
HAQKFFSKVA RDLNSVSASS QILVEIPPPR PKKKPLHPYP RKVADLLMKR SVVSDQPDRS  360
LSTNASLNDM ENLSSTSVLP TIGSDTTCPA VSELNTHCLS PISCTSNPPS GNTSSMEKDH  420
EGMTSHSFAT ENESPPSVQE IPSSKTENLS PSSSIKLFGK MVLIADSKRP STLTEECNDF  480
FSKRAHDDRL VEQNKKLLEA IPTDNMESQV SYELLCSSTR TCESLYETKG SLNKEKRRTD  540
AVSRTFRAAV NLSLELRLVD EGTGDLSSLY STSRSYNEIY GIQTYPGTTN GSQYRTNIQP  600
RMNSRGFVPY KRCAEEIDTL SLVNVSEESK TKKIRACS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3vla_A1e-341183168350EDGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017258097.10.0PREDICTED: protein REVEILLE 7-like
TrEMBLA0A164UUH10.0A0A164UUH1_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74472127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-43MYB_related family protein