PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023331
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 185aa    MW: 20308.5 Da    PI: 8.8072
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023331genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.7e-054971123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C++C + F ++  L  H++ H
  DCAR_023331 49 YECQYCQREFANSQALGGHQNAH 71
                 99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.8E-54475IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.17E-74576No hitNo description
PROSITE profilePS5015711.9464976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MSERDLHYPD HESDHKPTSS SVVKLFGFVV TDKDKTPGSE QHESDNRRYE CQYCQREFAN  60
SQALGGHQNA HKKERQRSKR AQLVSNHQTR RLAVNVPLIN AHAARSGPFV YSAGPAFRTP  120
ADACAYPQPP QVLPGVPLRN PGKFFVGRPY HFSNVGASYD TSPLSRSAAA EAASDGVVDV  180
DLHL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17479RQRSKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217961.11e-135PREDICTED: zinc finger protein 5-like
TrEMBLA0A161WPI21e-134A0A161WPI2_DAUCS; Uncharacterized protein
STRINGVIT_05s0077g01390.t013e-35(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105631724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.17e-15zinc finger protein 5