PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_023337

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

CAMTA

Protein Properties

Length: 422aa MW: 47460.8 Da PI: 6.2669

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_023337	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	164.2	2.3e-51	3	118	3	118
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100 + k+rwl+++ei+aiL n++ +++ ++ + p+ g ++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+nptf rrcyw DCAR_023337 3 EAKSRWLRPNEIHAILCNHKYFTIYVKPINLPPGGMMVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEEKIHVYYAHGEDNPTFVRRCYW 100 459********************************************************************************************* PP CG-1 101 lLeeelekivlvhylevk 118 lL+++le+ivlvhy++++ DCAR_023337 101 LLDKKLENIVLVHYRDTQ 118 *************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	74.964	1	123	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	4.9E-74	1	118	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.5E-45	3	116	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MEEAKSRWLR PNEIHAILCN HKYFTIYVKP INLPPGGMMV LFDRKMLRNF RKDGHNWKKK 60 KDGKTVKEAH EHLKVGNEEK IHVYYAHGED NPTFVRRCYW LLDKKLENIV LVHYRDTQES 120 QGSPSTPVNS NSCSILSEPS VSQLLSEESD SVVDQVYYTS EKAYLDPNES IQDHEYRIHE 180 INTLEWDELV VPEDPNKSIT TEAGIMSGFE QQNQYESSCY TTSHPIEISD TSDVPQHSQS 240 GSSEHLSDSA QSRSRDRTPI PAPAPTPAPE TSSQPRWPRR SVSAIRDFPP GCGPSNSAPR 300 AHPTTSARRA HPTASAPPTS PLPETPAPVP YHVYRAMVLD RDYLYARNLD LARMLDQSVA 360 SSSLGYISPS DDVRSRVRAL YDVALQQATN LDAYSAEEAR DHLATLVNWL IPQLQFLGGT 420 P*

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MEEAKSRWLR PNEIHAILCN HKYFTIYVKP INLPPGGMMV LFDRKMLRNF RKDGHNWKKK  60
KDGKTVKEAH EHLKVGNEEK IHVYYAHGED NPTFVRRCYW LLDKKLENIV LVHYRDTQES  120
QGSPSTPVNS NSCSILSEPS VSQLLSEESD SVVDQVYYTS EKAYLDPNES IQDHEYRIHE  180
INTLEWDELV VPEDPNKSIT TEAGIMSGFE QQNQYESSCY TTSHPIEISD TSDVPQHSQS  240
GSSEHLSDSA QSRSRDRTPI PAPAPTPAPE TSSQPRWPRR SVSAIRDFPP GCGPSNSAPR  300
AHPTTSARRA HPTASAPPTS PLPETPAPVP YHVYRAMVLD RDYLYARNLD LARMLDQSVA  360
SSSLGYISPS DDVRSRVRAL YDVALQQATN LDAYSAEEAR DHLATLVNWL IPQLQFLGGT  420
P*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017222907.1	1e-120	PREDICTED: calmodulin-binding transcription activator 6-like
Swissprot	O23463	1e-75	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A161X1N8	0.0	A0A161X1N8_DAUCS; Uncharacterized protein
STRING	VIT_05s0077g01240.t01	1e-100	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4565	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16940.1	4e-79	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	DCAR_023337

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]