PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023600
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 190aa    MW: 21606.7 Da    PI: 9.6922
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023600genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-193185256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 rk+ ++tk+q + Lee F++n++++ +++e LA++l+L+ rqV vWFqNrRa+ k
  DCAR_023600 31 RKKLRLTKQQSRLLEESFRQNHTLNPKQKETLAMELKLKPRQVEVWFQNRRARSK 85
                 78889************************************************98 PP
2HD-ZIP_I/II117.48.2e-3831119190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rl+k+q++lLEesF+++++L+p++K++la eL+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL+keveeLr +
  DCAR_023600  31 RKKLRLTKQQSRLLEESFRQNHTLNPKQKETLAMELKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLSEQNRRLQKEVEELR-A 119
                  69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-191688IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-181881IPR009057Homeodomain-like
PROSITE profilePS5007117.3622787IPR001356Homeobox domain
SMARTSM003891.6E-172991IPR001356Homeobox domain
CDDcd000865.13E-163088No hitNo description
PfamPF000464.9E-173185IPR001356Homeobox domain
PROSITE patternPS0002706285IPR017970Homeobox, conserved site
SMARTSM003401.5E-2187130IPR003106Leucine zipper, homeobox-associated
PfamPF021833.2E-1087121IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MRDLDINQVP SEEELIEEDD QNPNHDGAPP RKKLRLTKQQ SRLLEESFRQ NHTLNPKQKE  60
TLAMELKLKP RQVEVWFQNR RARSKLKQTE MECEYLKRWF GSLSEQNRRL QKEVEELRAM  120
KVAPPTVMTS HSSDPLLAST LTMCPQCERV TTTTAQPNAG PIRPSASKPS AMAAAKVPVI  180
HSRHSSPAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17987RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217587.11e-138PREDICTED: homeobox-leucine zipper protein HOX3 isoform X1
SwissprotQ0JKX13e-73HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH383e-73HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A164SQ761e-136A0A164SQ76_DAUCS; Uncharacterized protein
STRINGcassava4.1_022041m6e-89(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.14e-70homeobox-leucine zipper protein 17