PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023681
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 283aa    MW: 31814.5 Da    PI: 7.528
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023681genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05111130120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++C+ C+k+F+r  n++ H+
  DCAR_023681 111 FSCTVCNKTFNRYNNMQMHM 130
                  89*****************9 PP
2zf-C2H2140.00015196218123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +Cgk+F  + + ++H +++
  DCAR_023681 196 FGCRKCGKPFAVRGDWRTHEKNC 218
                  56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.76E-5104133No hitNo description
Gene3DG3DSA:3.30.160.608.5E-6111130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.079111133IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367111138IPR007087Zinc finger, C2H2
PfamPF128749.8E-5111130No hitNo description
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SMARTSM00355180159191IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.4E-6177216No hitNo description
Gene3DG3DSA:3.30.160.605.7E-5182216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355140196216IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MQPNTFAYMS STSDSGCCLD VEDQEDEESN ILLSLAPPGQ QHSANYQTHH NYQNPNYSNF  60
SNHQGEVTVA LHIGPPTPGA SSSNPNGVEA AAEAKYWIPT SAQILIGSTQ FSCTVCNKTF  120
NRYNNMQMHM WGHGSQYRKG PESLRGTKPA SSILRLPCYC CAEGCKNNIE HPRSKPLKDF  180
RTLQTHYKRK HGAKPFGCRK CGKPFAVRGD WRTHEKNCGK LWFCTCGSDF KHKRSLKDHV  240
RAFGNGHAPL CEDYDLFDVL EEADPHDEED HKSVVHRDYP MF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217956.10.0PREDICTED: zinc finger protein WIP6-like
SwissprotQ9FX681e-114ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A161WQD40.0A0A161WQD4_DAUCS; Uncharacterized protein
STRINGVIT_01s0011g03100.t011e-133(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-116C2H2-like zinc finger protein