PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023757
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 470aa    MW: 51080.4 Da    PI: 5.2852
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023757genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.7e-12342387655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR +i +++ +L+el+P+     +k  + a++L +Av++Ik+Lq
  DCAR_023757 342 SIAERVRRTKISERMRKLQELVPNM----DKQTNTADMLDLAVDHIKDLQ 387
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.888336386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-15339396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-12340391No hitNo description
Gene3DG3DSA:4.10.280.101.6E-14341401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-8342387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-13342392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MEKQQQQHQM NSGGLTRYQS APSSYFANLI NSNGYPGEDD CDQFLNTKAL SPETDGFFSR  60
FMSSCGDEES NAPAVLASEG NQSQFVAPMK HEPDIFDQQE QMVYHSQTQS DHKTVGMSSA  120
MENPYNVANS AGMDRVSQVK MGVIGESNSN LIRHSSSPAG LFANINVNKD GYAVMGGVGG  180
FGAGSGRNAE VSFSSASRFK NQIDHPQGVP STSGMMPHGS EIGGRTMGMG STETRSFGQS  240
RRNDGGNMTG GFPSTSWDDS ALLSDSYLKD FAEDDKKTFT NLNSSQNQSG EGGTRTPPTL  300
AHHLSLPTSS AELSAMDRLL NFQDSVPLKI RAKRGCATHP RSIAERVRRT KISERMRKLQ  360
ELVPNMDKQT NTADMLDLAV DHIKDLQKQV KDLVLSAMQE ELDNLCDQVA YFKDQPDTLW  420
GISSAMNADE PYDDSLCGNI RTAGCGCRSC IFHHLSSNDL MKLTYSDSG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1479241e-114FJ147924.1 Daucus carota subsp. sativus clone BAC C125A06 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017219935.10.0PREDICTED: transcription factor bHLH130-like isoform X1
TrEMBLA0A161X2L60.0A0A161X2L6_DAUCS; Uncharacterized protein
STRINGXP_008219331.11e-107(Prunus mume)
STRINGVIT_06s0004g01740.t011e-107(Vitis vinifera)
STRINGEOY325681e-107(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46052239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.19e-57bHLH family protein