PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023807
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 434aa    MW: 48954.6 Da    PI: 8.8218
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023807genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-05370392123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp C+k F++   L +H rtH
  DCAR_023807 370 HQCPFCSKIFKSGQALGSHKRTH 392
                  79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.212951IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-72953IPR007087Zinc finger, C2H2
PROSITE profilePS501579.3072956IPR007087Zinc finger, C2H2
SuperFamilySSF576674.69E-93051No hitNo description
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
SMARTSM003559.7286308IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-7286310IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492286313IPR007087Zinc finger, C2H2
PROSITE patternPS000280288308IPR007087Zinc finger, C2H2
SuperFamilySSF576674.69E-9365392No hitNo description
Gene3DG3DSA:3.30.160.608.1E-5368393IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.0E-8369393IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.676370397IPR007087Zinc finger, C2H2
SMARTSM003550.0072370392IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280372392IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MKEFGSLDGR ISKKMSRAVD SSSGASEARV CKQCGKGFQS LKALCGHMAC HSEKGRVLRE  60
YRCYWKSEKS EPVDDRFDLE ENPTRRTRSR AERYKKTVDE TFDYGNDNNS SSVCDIEDTE  120
DVAACLMMLS RDSRKWSGVN SIVKSSDNQS MVFETKSSSV EMKNPRDDGT YLADEIPQRK  180
KVVSRKLKSS GLVTESVSAS GYVRKADSDI SIEELFNHGG YKDAELSTFY NRVKHYKTDE  240
SKGLKGNEYD DVGISRKLLK LDSKKRARDR YDGVEPDKKV HSRKKYECVN CNRSFDSFQA  300
LGGHRPCHKK ADPSIQYEYD SGDNSLENDI TPISTPIRKL GQRFDDKKPV SRDFPVAAKK  360
KDRAKKSKAH QCPFCSKIFK SGQALGSHKR THSTYDPPED FGSSPPTARS LIDLNLPAPE  420
VDGEFYDDNQ FNN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017216981.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A161X2Q70.0A0A161X2Q7_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.15e-20C2H2-like zinc finger protein