PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_023944

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bZIP

Protein Properties

Length: 451aa MW: 49733.5 Da PI: 6.656

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_023944	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.4	3.5e-09	262	313	12	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 12 kNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 NR +A rs +RK +i+eLe+kv++L++e ++L+ +l +l+ l++e+ DCAR_023944 262 ANRQSAARSKERKMRYIAELERKVQALQTEATTLAAQLTMLQRDTNGLTAEN 313 5****************************************99888887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.6E-10	252	315	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.852	256	316	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.27E-9	257	306	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.9E-7	258	303	No hit	No description
Pfam	PF00170	5.4E-7	259	309	IPR004827	Basic-leucine zipper domain
CDD	cd14703	3.75E-21	259	305	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MEKDRSVNLG GGLLPPSGRF SPFRPSGSAL NVKTEPSGST AVPQLRPDSL AEAGRFGHGL 60 SSDTNHFSYD ISQMPDNPPK NRGHRRAHSE ILTLPDDLSF DSDLGVVGAL DGPSYSDETE 120 EDLFSMYLDM DKFNASATSS FQVGEQSSAS GQPSILAPAS GQAAPSTDNM VFASTDRPRI 180 RHQHSQSMDG STTIKQEMLM SGTEDPSSIE AKKSMSAAKL AELALVDPKR AKSFYITILH 240 PCLLTCNLRG IILAWQRNRI WANRQSAARS KERKMRYIAE LERKVQALQT EATTLAAQLT 300 MLQRDTNGLT AENSELKLRL QTTEQQVHLQ DALNEALKEE IQHLKLLTGQ NIANGGSMVN 360 FPPYGASQQY YPTNQAMQSM LTAQQFQQLQ LHSQKQQNQF QQQQLLQQFQ QQQHQYREQH 420 LSQGGDMKMK GATSSGNLGE SSQDISMSKE *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MEKDRSVNLG GGLLPPSGRF SPFRPSGSAL NVKTEPSGST AVPQLRPDSL AEAGRFGHGL  60
SSDTNHFSYD ISQMPDNPPK NRGHRRAHSE ILTLPDDLSF DSDLGVVGAL DGPSYSDETE  120
EDLFSMYLDM DKFNASATSS FQVGEQSSAS GQPSILAPAS GQAAPSTDNM VFASTDRPRI  180
RHQHSQSMDG STTIKQEMLM SGTEDPSSIE AKKSMSAAKL AELALVDPKR AKSFYITILH  240
PCLLTCNLRG IILAWQRNRI WANRQSAARS KERKMRYIAE LERKVQALQT EATTLAAQLT  300
MLQRDTNGLT AENSELKLRL QTTEQQVHLQ DALNEALKEE IQHLKLLTGQ NIANGGSMVN  360
FPPYGASQQY YPTNQAMQSM LTAQQFQQLQ LHSQKQQNQF QQQQLLQQFQ QQQHQYREQH  420
LSQGGDMKMK GATSSGNLGE SSQDISMSKE *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017217544.1	0.0	PREDICTED: probable transcription factor PosF21
Refseq	XP_017217545.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-146	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A161ZL68	0.0	A0A161ZL68_DAUCS; Uncharacterized protein
STRING	EMJ23579	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3965	21	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-132	bZIP family protein

Link Out ? help Back to Top
Phytozome	DCAR_023944

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]