PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023971
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 351aa    MW: 38822 Da    PI: 6.3489
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023971genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.31.5e-23132194159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT.EEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk.vveitYegeHnhe 59 
                  +dDg++WrKYGqK++ ++++pr+YYrCt++   gC ++k+v++++edp  +  +tY g+H+++
  DCAR_023971 132 VDDGHAWRKYGQKSILNAKYPRHYYRCTHKfeqGCLATKQVQKTEEDPApMYRTTYYGRHTCK 194
                  59***************************9999**************975889********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-25118194IPR003657WRKY domain
PROSITE profilePS5081118.36127191IPR003657WRKY domain
SuperFamilySSF1182901.23E-22127194IPR003657WRKY domain
SMARTSM007741.6E-35132195IPR003657WRKY domain
PfamPF031068.5E-24133194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSSMEKESFS PETVAGNEKK ATQVLSNGLE FAAQLRIMLS SQRLGDVDHT LCNMSAGDLV  60
TKILDSFEKS LLILQRPSSI SDEVSQVPVN SGAPMSEELD SSHTPKMVKD RRGCFKRRRT  120
SEAETKVSST PVDDGHAWRK YGQKSILNAK YPRHYYRCTH KFEQGCLATK QVQKTEEDPA  180
PMYRTTYYGR HTCKNTYSDH TQFFNLDSID QSDPSSKSIL LNFQQNIPSL SSLNDNYRNH  240
STSSTRKFIN KESGAMMNDN TNQSSSSLAD YNFVSGRRTL ATFGSSTTRT ELLSPAGSDH  300
GDVISSGVYS CSTSTSPDHT TAFEDQLDMM VAGVVNFDGG DDMAMDSFLL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-22132194869OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215655.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A164SYH60.0A0A164SYH6_DAUCS; Uncharacterized protein
STRINGcassava4.1_011680m3e-58(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42302143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-36WRKY DNA-binding protein 70