PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024178
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family CPP
Protein Properties Length: 818aa    MW: 88592.1 Da    PI: 6.6305
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024178genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.86.7e-16488525239
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                   +k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk
  DCAR_024178 488 ACKRCNCKKSKCLKLYCECFAAGVYCVEPCSCQECFNK 525
                  589**********************************8 PP
2TCR512.8e-16573611139
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                  ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  DCAR_024178 573 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 611
                  589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011149.7E-16487528IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.095488613IPR005172CRC domain
PfamPF036381.3E-11490525IPR005172CRC domain
SMARTSM011147.5E-18573614IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.0E-12575611IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MGKDGVNLEK EGEGVVMDTP ERKQFTSPVS KIEDSPVFNY LNSLSPIKPF KSIHITQTFN  60
SLTFSSPPSV FTSPHVSSQR DSRFLRRHQF SDPSKPDFSG NSEEKVAKNE EATENAHNSA  120
QQQHFNQGSL ASESSAEPLY DTSVVVELPQ NLNGECVSPD CDGTSNCGMG IRCVSELGGS  180
STEVIPYAEI GSGKENIERE IHLEGPSHID ANKEAAGCDW DNLFSDEGDL LLFDTPNDSK  240
SLVDPGQRSL LPGMSFCTSL TDNMQISEAV NAVGLGPDNH SSLLECGQNI KAVIDQDIPA  300
SGSQSVAGDT SEKVDNEIAS NLQRGMRRRC LVFEMVGSRR KRLDDGSSTS VLLQCHENPA  360
SSDKCVVPLQ PVSNIPRRRL PGIGLHLNTL AATSVDHKVV KHEALVPGGQ PISVSGSAAY  420
INSSNSQQIL DSALVMYSSD RDMCPIGDGT PMAEDAAQGS GYMVNESLNH NSPKKKRRKS  480
DSDGESDACK RCNCKKSKCL KLYCECFAAG VYCVEPCSCQ ECFNKPIYED TVLATRKQIE  540
SRNPLAFAPK VIRNSDSIIE IGEETSKTPA SARHKRGCNC KKSGCLKKYC ECYQGGVGCS  600
INCRCEGCKN AFGRKDGTEV ELGEEEEAEH ENNAVNRSLQ ISTIQNDAEQ NPSFAIPATP  660
SQFGSQSIQP ISSKSKRPPR SSFLSIGGSS SAIYGTPAFG KLNPLRPLSK IQNDQKDEIP  720
EILQKNASPN SRVKLSSPNS KRVSPPHGNI GQSQGQRSSL IAISVCSLSK MLAMSSKFCV  780
QLLCVYRTRS YYFNVDAAGA CHRFRNIDAT TNNARIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-1749061012120Protein lin-54 homolog
5fd3_B4e-1749061012120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326341RRRCLVFEMVGSRRKR
2473477KKKRR
3473478KKKRRK
4474478KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00370DAPTransfer from AT3G22780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217612.10.0PREDICTED: protein tesmin/TSO1-like CXC 3
TrEMBLA0A164T4E40.0A0A164T4E4_DAUCS; Uncharacterized protein
STRINGXP_008224266.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24672345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.11e-121Tesmin/TSO1-like CXC domain-containing protein