PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024215
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 606aa    MW: 69912.9 Da    PI: 8.9009
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024215genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-08400439345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       WT+eE e l++  k++G++ Wk+ a+++   R + q+k+ ++
      DCAR_024215 400 EWTEEEKEMLLEQYKKHGNN-WKLMAKEFK--RHRLQVKDTYR 439
                      6*****************99.********7..78888887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.67320393IPR017877Myb-like domain
SMARTSM007174.5E-4324395IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-6324388IPR009057Homeodomain-like
PROSITE profilePS5129311.531396446IPR017884SANT domain
SMARTSM007175.1E-6397444IPR001005SANT/Myb domain
SuperFamilySSF466898.05E-9399454IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-8399442IPR009057Homeodomain-like
CDDcd001673.65E-5400442No hitNo description
PfamPF139216.4E-14401458No hitNo description
Gene3DG3DSA:1.10.10.606.5E-6443512IPR009057Homeodomain-like
SMARTSM007172.2446512IPR001005SANT/Myb domain
PROSITE profilePS500907.294512565IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MSVWVGESDV VGKSGKKGKR SQKIEKGGEE EVRDHLDVEE GGIVKSGKKG KRSKKKEMDG  60
VEEETDRMDV VEDGIGNSRK KGKKKEMDGV GEVMDCLDME EDGIGKSRKK GEKSKEKDGA  120
EEMNDQTNVE NDRNLESTVE NKKKKNKGND MVAGGESMTD PQDKEYKVEK RKKKKKTKTF  180
ENQDALNKKT ETEAKERNNI AGNVEKKKKK RKRTVEEEDD NDKGQTNGCY GEDHVNSLPD  240
DNGMVTIGKV KMMEKKKKRQ RKNEEITGKD GLLSKAKDNE TTNVSGKDKT KSVNKDPENP  300
KSKVKKKVRF SNDLEVFPSN SLVQGKRFTP EEDEKLRAAV KEYIQSHCLG EKGVEMVMNC  360
ISHRQVRNCW NEINKALPYR PKSAIYCRAH TLFERGETHE WTEEEKEMLL EQYKKHGNNW  420
KLMAKEFKRH RLQVKDTYRR IKRERNRGHW SQEEYQTLFD NVNIDLRAKL DEEKKSKHGM  480
LRDNICWTAI SDKLSTRADS LCCMKWYNQL TSPMVAQGIW ADSDDYRLLD ALFNLDACCI  540
EDVDWDDLMD HRSGDVCRKR WDQMVLHIGL HGVKSFSEQV EVLAKRYRPE LTEAREAWDS  600
KPLVP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206211KKKKRK
2206212KKKKRKR
3208213KKRKRT
4255260KKKRQR
5302308KVKKKVR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017219356.10.0PREDICTED: transcription termination factor 1-like
TrEMBLA0A164T5E30.0A0A164T5E3_DAUCS; Uncharacterized protein
STRINGXP_009605412.11e-145(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10291429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-108MYB_related family protein