PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024503
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 284aa    MW: 30792.4 Da    PI: 10.1682
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024503genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.47.9e-14100144347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
      DCAR_024503 100 AWTEEEHRLFLMGLQRVGKGDWRGISRNFVKTRTPTQVASHAQKY 144
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.62393149IPR017930Myb domain
SuperFamilySSF466895.53E-1795150IPR009057Homeodomain-like
TIGRFAMsTIGR015578.9E-1796147IPR006447Myb domain, plants
SMARTSM007178.4E-1097147IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-1199144IPR009057Homeodomain-like
PfamPF002495.4E-11100144IPR001005SANT/Myb domain
CDDcd001677.43E-9100145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDAFSSSGSK SRIDGHVGPV CMEPKGGGSS GLRGGGEGIM LFGVRVVEGA SSFRKSASMN  60
NLAQYEHAQD SNSDVVAAGY ASDDVVHASG GGRERKRGVA WTEEEHRLFL MGLQRVGKGD  120
WRGISRNFVK TRTPTQVASH AQKYFLRRNN HNRRRRRSSL FDITTQDTYM CNKTEDYPAA  180
LPLSRDASME NLTLRQAKFI RPIPKFPIPP SSKMADLSLN NTSTPVQQPE QMLPLNINLS  240
IDSPGSSSSS KQLPATAGQV PNFQEMPGSF SSNNGDNNII SVA*
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00630PBMTransfer from PK17526.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017216089.10.0PREDICTED: transcription factor MYB1R1-like
SwissprotQ2V9B04e-49MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A161Y5560.0A0A161Y556_DAUCS; Uncharacterized protein
STRINGXP_006483741.11e-84(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114232225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.21e-61MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]