PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_024557

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

MYB_related

Protein Properties

Length: 1129aa MW: 126265 Da PI: 9.1431

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_024557	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.9	1.1e-08	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e +++a +++G++ Wk++ + + +R+ +++ DCAR_024557 46 QWSKEELEHFYQAYRKHGKD-WKKVGAVLR-NRSIEMV 81 6***************99.*****.98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.42E-9	42	90	IPR009057	Homeodomain-like
SMART	SM00717	0.0068	43	91	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-7	46	81	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.4E-4	46	79	IPR009057	Homeodomain-like
CDD	cd00167	5.74E-5	47	81	No hit	No description
Pfam	PF06584	1.3E-31	596	696	IPR033471	DIRP domain
SMART	SM01135	2.9E-57	596	697	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1129 aa Download sequence Send to blast
MGPARKSRSV YKRHSNINDV SPVKHEEAAD RRVPRKRKLS DMLGPQWSKE ELEHFYQAYR 60 KHGKDWKKVG AVLRNRSIEM VEALYTMNRA YLSLPEGTAS VAGLIAMMTD HYCNLAGSDS 120 EQESNEGAGT SRKFQKRSQA KAQPKTSKGS EGRLTTSSQA IAPSYDYLPL LKKKRSGGTR 180 PRVVGKRTPR FAVSFSHENI NRDAYNSPTR QYGDANDSDV GHENLIALAE ASQRGGSSRF 240 SRSAKRMVGD SDMDEDDLEG SMNADNEDYP RNKRYMMKAG NKSVLSRKEP RVYGKKLEVD 300 NNRNSRDEIR EACSGTEEQK LGAVREKSEI EVSNGKHSRY SQGRWKRSKK VLFDQDEASA 360 LTGLEALANA VLMPESTNDN DSSIHVKEES NEVEEPESLD GIDNRTHQIE KGWVSETRWN 420 QSIPGSKHAA TNRTSILGKD SAHGVSRSPE AELKTLYSVT KLSRKKQKTL ASKVSAERHT 480 DNHMSESQVA EGREVWNKLS KGKRSSQSAS PMLNKYPENS SSSTCPKKEA GDSAISGVCL 540 PVADQVDITN KVRRFRKTMV RKGLKYADSE VSDRTKKLLN CFSNHQVRRW CAFEWFYSAI 600 DYPWFAKREF VEYLLHVGLG HVPRLTHVEW GVIRSSLGKP RRFSEQFLKE EKEKLNRYRD 660 SVRTHYTELH SGTREGLPTD LARPLSVGQR VTAIHPKTRE IHDGSVLTVD HNRCRVQFDR 720 PELGVEFVMD IDCMPSNPLE NMPTSMTRHI SARDIENLSN FRMNGQAKDQ RPEGYIKFSP 780 SENLENVFSG PHTSAASHPT FNLLDPAKIG SAFVDSQAIL GPKDKVPNPQ ISYSHPSTLA 840 HIKAQEADVQ AIAELSRALE KKVPQVLVSE LREMNNDVLG NQKDGVSTLK DSEPFKKQYA 900 AVLVQLRDAD ERVTSALDCL KQRNTYQGNG SLTWPKPMAN SVSSVGVFNS SNCSLQNEEY 960 GSHVNEIVLS SRTRAHTMVS AAIQAFSSMK GGGNTFEKIE EAIDYVYDQI PSEETYIPSE 1020 RPFIATESGN LASQELKSGT LSPLQTLFNP QSDKQNLVPS ELIAKCVATL LMIQKCTERQ 1080 FPPADVAQIL DSAVTSLQPC SSKNLPVYAD IEKCMIMIRN QIMALVPT*

Sequence ? help Back to Top

Protein Sequence Length: 1129 aa Download sequence Send to blast

MGPARKSRSV YKRHSNINDV SPVKHEEAAD RRVPRKRKLS DMLGPQWSKE ELEHFYQAYR  60
KHGKDWKKVG AVLRNRSIEM VEALYTMNRA YLSLPEGTAS VAGLIAMMTD HYCNLAGSDS  120
EQESNEGAGT SRKFQKRSQA KAQPKTSKGS EGRLTTSSQA IAPSYDYLPL LKKKRSGGTR  180
PRVVGKRTPR FAVSFSHENI NRDAYNSPTR QYGDANDSDV GHENLIALAE ASQRGGSSRF  240
SRSAKRMVGD SDMDEDDLEG SMNADNEDYP RNKRYMMKAG NKSVLSRKEP RVYGKKLEVD  300
NNRNSRDEIR EACSGTEEQK LGAVREKSEI EVSNGKHSRY SQGRWKRSKK VLFDQDEASA  360
LTGLEALANA VLMPESTNDN DSSIHVKEES NEVEEPESLD GIDNRTHQIE KGWVSETRWN  420
QSIPGSKHAA TNRTSILGKD SAHGVSRSPE AELKTLYSVT KLSRKKQKTL ASKVSAERHT  480
DNHMSESQVA EGREVWNKLS KGKRSSQSAS PMLNKYPENS SSSTCPKKEA GDSAISGVCL  540
PVADQVDITN KVRRFRKTMV RKGLKYADSE VSDRTKKLLN CFSNHQVRRW CAFEWFYSAI  600
DYPWFAKREF VEYLLHVGLG HVPRLTHVEW GVIRSSLGKP RRFSEQFLKE EKEKLNRYRD  660
SVRTHYTELH SGTREGLPTD LARPLSVGQR VTAIHPKTRE IHDGSVLTVD HNRCRVQFDR  720
PELGVEFVMD IDCMPSNPLE NMPTSMTRHI SARDIENLSN FRMNGQAKDQ RPEGYIKFSP  780
SENLENVFSG PHTSAASHPT FNLLDPAKIG SAFVDSQAIL GPKDKVPNPQ ISYSHPSTLA  840
HIKAQEADVQ AIAELSRALE KKVPQVLVSE LREMNNDVLG NQKDGVSTLK DSEPFKKQYA  900
AVLVQLRDAD ERVTSALDCL KQRNTYQGNG SLTWPKPMAN SVSSVGVFNS SNCSLQNEEY  960
GSHVNEIVLS SRTRAHTMVS AAIQAFSSMK GGGNTFEKIE EAIDYVYDQI PSEETYIPSE  1020
RPFIATESGN LASQELKSGT LSPLQTLFNP QSDKQNLVPS ELIAKCVATL LMIQKCTERQ  1080
FPPADVAQIL DSAVTSLQPC SSKNLPVYAD IEKCMIMIRN QIMALVPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	38	PRKRKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM437233	4e-33	AM437233.2 Vitis vinifera contig VV78X223624.13, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017218645.1	0.0	PREDICTED: protein ALWAYS EARLY 3-like isoform X2
Refseq	XP_017218646.1	0.0	PREDICTED: protein ALWAYS EARLY 3-like isoform X3
TrEMBL	A0A161X4S8	0.0	A0A161X4S8_DAUCS; Uncharacterized protein
STRING	Solyc01g067560.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3312	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	DCAR_024557