PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_024653

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TCP

Protein Properties

Length: 345aa MW: 37182.8 Da PI: 4.4781

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_024653	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	86.1	8.5e-27	52	128	10	83
TCP 10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssas 83 + kv gRd RvR++++caar+F+L++eL + ++++tieWLl+qa+p+i+++tgt++ +a++ +++ssss+s DCAR_024653 52 ERQPKVHGRDYRVRIPVLCAARIFQLTRELYHRTNGETIEWLLRQAEPSIIAATGTGTVPAQSIsclYDVTSSSSTS 128 567799**************************************************888884443354444444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	17.834	50	104	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	4.2E-22	52	140	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MTISMAISSP ARSQSTSARM NTSLSLRPTT SFKASMPQNI SPVSTTNNRI EERQPKVHGR 60 DYRVRIPVLC AARIFQLTRE LYHRTNGETI EWLLRQAEPS IIAATGTGTV PAQSISCLYD 120 VTSSSSTSVF SPSSSTMVAP NVDPSRIEVN HPMSPPVTMM ADVYPPMMQN SQHVEGLEAN 180 LPLSLSTTMH LPVAYNPESF DMQGAERVVL NAPMNSSAMI PDVFSPRMHN AQPVNDVGVA 240 IPLNQSAMEV RNVYPQEFPT FIHAGGDEAN PDLGGSTTVM FPYVFPPEVW KEVEANDLVS 300 SSAGIDLNVV PPGMDDLQQS EGVEVDQFAS SSTGVVPTTG DDAI*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MTISMAISSP ARSQSTSARM NTSLSLRPTT SFKASMPQNI SPVSTTNNRI EERQPKVHGR  60
DYRVRIPVLC AARIFQLTRE LYHRTNGETI EWLLRQAEPS IIAATGTGTV PAQSISCLYD  120
VTSSSSTSVF SPSSSTMVAP NVDPSRIEVN HPMSPPVTMM ADVYPPMMQN SQHVEGLEAN  180
LPLSLSTTMH LPVAYNPESF DMQGAERVVL NAPMNSSAMI PDVFSPRMHN AQPVNDVGVA  240
IPLNQSAMEV RNVYPQEFPT FIHAGGDEAN PDLGGSTTVM FPYVFPPEVW KEVEANDLVS  300
SSAGIDLNVV PPGMDDLQQS EGVEVDQFAS SSTGVVPTTG DDAI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017217164.1	0.0	PREDICTED: transcription factor PCF2-like
TrEMBL	A0A161Y5J4	0.0	A0A161Y5J4_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-27	TCP family protein

Link Out ? help Back to Top
Phytozome	DCAR_024653