PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_024685

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

HRT-like

Protein Properties

Length: 449aa MW: 50513.3 Da PI: 9.7371

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_024685	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	53.6	3.7e-17	249	279	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+l+ G +C+ +Pv gRKRC eHKGm++ DCAR_024685 249 MCGVALGQGYICTSPPVYGRKRCSEHKGMKV 279 6****************************97 PP
2	HRT-like	54.4	2e-17	324	354	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CG+ + dGs C r+Pv+gRKRCeeHKG+Ri DCAR_024685 324 TCGLVMPDGSLCAREPVRGRKRCEEHKGRRI 354 7*****************************7 PP
3	HRT-like	31.4	3.3e-10	416	441	1	26
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeH 26 +CG+++++Gs+Ckr+P k KRC++H DCAR_024685 416 TCGAKTRNGSFCKRKPGKNSKRCWQH 441 7************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00719	0.00707	75	103	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MKHLTAIPGS FETKFLEILI GPSDWEDHLL NKDGAERYRT QNLPNCCSCP GLYELGIAVS 60 RPRTGREFDK LNSNNIIPVY VGQANNVRTR LQRYGREGAH LEKGFPNTEL NDSEGLQLFT 120 EIFSRGFPIV YRWAPMKSKK VAEETEASLL GVFDYAWNRG GNGARRPNAI FHKLDRSISS 180 AAWSHPIIRR LQSFRQKEVG LKIITHQDES DAYSEQASKN IISRIFKFGR SRPTLVSDRF 240 KVDKDGNNMC GVALGQGYIC TSPPVYGRKR CSEHKGMKVN SSKCTSEMNS LLKSAANNPF 300 YVDHSGTLKL QHQNCVADEK MSFTCGLVMP DGSLCAREPV RGRKRCEEHK GRRINKTFLK 360 LVREEKTHNL EIPGLDLRTL SGDNETNKTV KHQSSCSSER CIVSIHEASA QEESPTCGAK 420 TRNGSFCKRK PGKNSKRCWQ HHDKSSDK*

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MKHLTAIPGS FETKFLEILI GPSDWEDHLL NKDGAERYRT QNLPNCCSCP GLYELGIAVS  60
RPRTGREFDK LNSNNIIPVY VGQANNVRTR LQRYGREGAH LEKGFPNTEL NDSEGLQLFT  120
EIFSRGFPIV YRWAPMKSKK VAEETEASLL GVFDYAWNRG GNGARRPNAI FHKLDRSISS  180
AAWSHPIIRR LQSFRQKEVG LKIITHQDES DAYSEQASKN IISRIFKFGR SRPTLVSDRF  240
KVDKDGNNMC GVALGQGYIC TSPPVYGRKR CSEHKGMKVN SSKCTSEMNS LLKSAANNPF  300
YVDHSGTLKL QHQNCVADEK MSFTCGLVMP DGSLCAREPV RGRKRCEEHK GRRINKTFLK  360
LVREEKTHNL EIPGLDLRTL SGDNETNKTV KHQSSCSSER CIVSIHEASA QEESPTCGAK  420
TRNGSFCKRK PGKNSKRCWQ HHDKSSDK*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017215482.1	0.0	PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A164TI41	0.0	A0A164TI41_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7741	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	3e-85	effector of transcription2

Link Out ? help Back to Top
Phytozome	DCAR_024685